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We developed a method, called RNA Assembler using Secondary Structure Information Effectively (RASSIE), for predicting RNA tertiary structures using known secondary structure information. We attempted a fragment assembly-based method that uses a secondary structure-based fragment library. For several typical target structures such as stem-loops, bulge-loops, and 2-way junctions, our method provided numerous good quality candidate structures in less computational time than previously proposed methods. By using a high-resolution potential energy function, we were able to select good predicted structures from candidate structures. This method of efficient conformational search and detailed structure evaluation using high-resolution potential is potentially useful for the tertiary structure prediction of RNA. 相似文献
153.
Silva AA Haraguchi SK Cellet TS Schuquel IT Sarragiotto MH Vidotti GJ de Melo JO Bersani-Amado CA Zanoli K Nakamura CV 《Natural product research》2012,26(9):865-868
A phytochemical study of the ethyl acetate fractions from the partition of seeds and roots methanol extracts of Cenchrus echinatus L. led to the isolation of three resveratrol-derived stilbenoids: pallidol (1), carasiphenol C (2) and nepalensinol B (3). The results of a topic anti-inflammatory evaluation, DPPH assay and antiproliferative activity against adenocarcinoma cells (Caco 2) are described. 相似文献
154.
Murai K Nakamura A Matsushita T Shimura M Fujioka H 《Chemistry (Weinheim an der Bergstrasse, Germany)》2012,18(27):8448-8453
A method for conducting enantioselective bromolactonization reactions of trisubstituted alkenoic acids, using the C(3)-symmetric trisimidazoline 1 and 1,3-dibromo-5,5-dimethyl hydantoin as a bromine source, has been developed. The process generates chiral δ-lactones that contain a quaternary carbon. The results of studies probing geometrically different olefins show that (Z)-olefins rather than (E)-olefins are favorable substrates for the process. The method is not only applicable to acyclic olefin reactants but can also be employed to transform cyclic trisubstituted olefins into chiral spirocyclic lactones. Finally, the synthetic utility of the newly developed process is demonstrated by its application to a concise synthesis of tanikolide, an antifungal marine natural product. 相似文献
155.
Akemi Umeyama Chihiro Ohta Yukari Shino Minori Okada Yukari Nakamura Tatsuya Hamagaki Hiroshi Imagawa Masami Tanaka Aki Ishiyama Masato Iwatsuki Kazuhiko Otoguro Satoshi Ōmura Toshihiro Hashimoto 《Tetrahedron》2014
During the search for new antitrypanosomal drug leads, three new antitrypanosomal compounds, hexatenuins A–C (1–3), were isolated from the fruiting body of Hexagonia tenuis. 1 and 3 possessed an unusual malonate half-ester functional group at C-3 position, and 1 and 2 had a spirostructure in the side-chain. Their structures were elucidated using MS analyses, extensive 2D-heteronuclear NMR data interpretation. Compounds 1–3 showed in vitro antitrypanosomal activity against Trypanosoma brucei brucei with IC50 values of 0.57, 8.60 and 5.62 μg/ml, respectively. 相似文献
156.
Taiju Takahashi Shusuke Nakamura Yukihiro Kudoh 《Molecular Crystals and Liquid Crystals》2015,611(1):146-152
The sum of the flexo-coefficients (e11+e33) was measured by the capacitance characteristic depending on the applied dc voltage in the HAN cell. The voltage for the minimum value of the capacitance was shifted by the influence of flexoelectric effect. One of the important problems for the evaluation for the flexo effect was the influence of impurity ions. Then, the chromatographic isolation phenomenon was used to separate impurity ions when the LC material was injected into the empty cell by the capillary action. The coefficient (e11+e33) of ZLI-4792 was measured, and a value of 26.0 pC/m was obtained. 相似文献
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Li ZhangYoshio Hashimoto Toshinori TaishiIsao Nakamura Qing-Qing Ni 《Applied Surface Science》2011,257(15):6577-6582
A novel flower-shaped Bi2O3 superstructure has been successfully synthesized by calcination of the precursor, which was prepared via a citric acid assisted hydrothermal process. The precursor and Bi2O3 were characterized with respect to morphology, crystal structure and elemental chemical state by field-emission scanning electron microscopy (FESEM), transmission electron microscopy (TEM), X-ray diffraction (XRD) and X-ray photoelectron spectroscopy (XPS). It was shown that both the precursor and Bi2O3 flower-shaped superstructure were constructed of numerous nanosheets while the nanosheets consisted of a great deal of nanoparticles. Furthermore, key factors for the formation of the superstructures have been proposed; a mechanism for the growth of the superstructure has been presented based on the FESEM investigation of different growth stages. 相似文献