An ab initio method for approximation of the frozen molecular fragment

An ab initio method for calculation on many-electron molecular systems with the approximation of the inactive part of a molecule by frozen molecular fragment is presented. In the following method the SCF calculations are performed in two series. First the molecular orbitals resulting from the first SCF calculation (modest basis set) are localized. In the second SCF run, the basis set is extended for the active part of the molecule, while molecular orbitals of the inactive part, selected from the localized set, are kept frozen. The results are in good agreement with the extended basis set calculation.     

The structures of 5-methyl-5-phenyl-5H-dibenzo[b,f] silepin and its saturated analog

The structures of 5-methyl-5-phenyl-5H-dibenzo[b,f] silepin (I) and 5-methyl- 5-phenyl-1O,11-dihydro-5H-dibenzo [b,f] silepin (II) have been determined from three-dimensional X-ray data collected by counter methods. I crystallizes in the orthorhombic space group Pnam with a 7.596(3), b 18.102(5) and c 12.190(2) Å; observed and calculated densities (Z = 4) are 1.17 and 1.18 g cm^?3, respectively. II crystallizes in the monoclinic space group $\text{P}\text{2}{}_1\text{c}$ with a 11.115(3), b 7.920(3), c 20.765(5) Å and β 111.71(2)°; observed and calculated densities (Z = 4) are 1.17 g cm^?3. Anisotropic refinement of nonhydrogen atoms, with hydrogen atoms included at fixed ideal locations, gave conventional R-factors of 4.5% (I) and 5.0% (II). Compound I exhibits the boat conformation for the tricyclic framework and is located on a crystallographically required mirror plane. Com- pound II has the expected folded boat conformation. The torsion angle about the 10,11-bond is 0.0° for I, a crystallographic symmetry requirement, and 89.9° for II. Mean SiC bond distances are 1.863 Å(I) and 1.875 Å(II). The dihedral angles between the planar benzo groups are 129.7° (I) and 137.2° (II); introduc- tion of unsaturation at the 10,11-position decreases the dihedral angle in the tri- cyclic system, i.e., the tricyclic system is more bent.     

Ab initio MRD-CI calculations for breaking a chemical bond in a molecule in a crystal or other solid environment. III. Me2N?NO2 decomposition of dimethylnitramine in a large crystalline environment

Recently we extended our strategy for MRD-CI (multireference double excitation-configuration interaction) calculations, based on localized/local orbitals and an “effective” CI Hamiltonian, for molecular decompositions of large molecules to breaking a chemical bond in a molecule in a crystalline or other solid environment. Our technique begins with an explicit quantum chemical SCF calculation for a reference molecule surrounded by a number of other molecules in the multipole environment of more distant neighbors. The resulting canonical molecular orbitals are then localized, and the localized occupied and virtual orbitals in the region of interest are included explicitly in the MRD-CI with the remainder of the occupied localized orbitals being folded into an “effective” CI Hamiltonian. The MRD-CI calculations are then carried out for breaking a bond in the reference molecule. This method is completely general in that the space treated explicitly, as well as the surrounding space, may contain voids, defects, deformations, dislocations, impurities, dopants, edges and surfaces, boundaries, etc. Dimethylnitramine is the smallest prototype of the energetic R₂N—NO₂ nitramines, such as the 6-member ring RDX or the 8-member ring HMX. Decomposition of energetic compounds is initiated in the solid by a breaking of the target bond. Thus, it is crucial to know the difference in energy between breaking a bond in an isolated energetic molecule versus in the molecule in a solid. In the present study, we have carried out MRD-CI calculations for the Me₂N—NO₂ dissociation of dimethylnitramine in a dimethylnitramine crystal. The cases we investigated were one dimethylnitramine molecule (surrounded by 53 and 685 neighboring dimethylnitramine molecules represented by multipoles), three dimethylnitramine molecules, and three dimethylnitramine molecules (surrounded by 683 neighbors). All multipoles were cumulative atomic multipoles up through quadrupoles. The MRD-CI calculations on dimethylnitramine required large numbers of reference configurations from which were allowed all single and double excitations.     

Macrocyclic thioether design by molecular modelling

Abstract

Two trithiamacrocycles have been designed by molecular modelling to have preorganised endodentate sulfur donor atoms. These new macrocycles have five- and six-membered saturated heterocycles inserted into 2,5,8-trithia[9]-m-benzenophane; molecular dynamics simulations suggest that the endo forms will be rigid on a nanosecond timescale. Optimum metal-sulfur distances which the new ligands will accommodate lie between 2.76 Å and 2.95 Å, suggesting they will be particularly suitable for a large soft metal ion such as silver(I).