Synthesis of all diastereomeric methyl 2,5-anhydro-3-deoxy-hexonates: precursors to C-2-deoxynucleosides and THF-templated γ- and δ-amino acids

Efficient syntheses of all diastereomers of methyl 2,5-anhydro-3-deoxy-hexonate from mannono- or gulono-lactones provide precursors for C-nucleosides of 2-deoxyribose and for THF-templated γ- and δ-amino acids.     

A Generalized Markov Sampler

A recent development of the Markov chain Monte Carlo (MCMC) technique is the emergence of MCMC samplers that allow transitions between different models. Such samplers make possible a range of computational tasks involving models, including model selection, model evaluation, model averaging and hypothesis testing. An example of this type of sampler is the reversible jump MCMC sampler, which is a generalization of the Metropolis–Hastings algorithm. Here, we present a new MCMC sampler of this type. The new sampler is a generalization of the Gibbs sampler, but somewhat surprisingly, it also turns out to encompass as particular cases all of the well-known MCMC samplers, including those of Metropolis, Barker, and Hastings. Moreover, the new sampler generalizes the reversible jump MCMC. It therefore appears to be a very general framework for MCMC sampling. This paper describes the new sampler and illustrates its use in three applications in Computational Biology, specifically determination of consensus sequences, phylogenetic inference and delineation of isochores via multiple change-point analysis.     

Introduction to the proceedings of the thirteenth symposium on biotechnology for fuels and chemicals

Applied Biochemistry and Biotechnology -     

The structure-activity relationship of inhibitors of serotonin uptake and receptor binding

Summary An analysis of five different datasets of inhibitors of serotonin uptake has yielded quantitative structure/ activity relationships (QSARs) which delineate the role of steric and hydrophobic properties essential for inhibition by phenylethylamine-type analogues.     

A search for fractional electric charge in sea water

The magnetic levitation technique has been used to test for fractional electric charge in sea water, using steel balls coated with sea water residue by evaporation. The objective was to reach concentration levels below 1 g^?1 which might result from cosmic ray interactions. Four stages of increasing sensitivity are reported: (1) residue from direct evaporation of unprocessed sea water, (2) residue from sea water samples enriched by ion exchangen, (3) residue reduced by high temperature evaporation, and (4) hypothetical enrichment by dilution and separation of soluble residue. Stages 1–3 are based on the generally accepted preferential retention of fractional charge during evaporation, but stage 4 limits are subject to uncertainties in the enrichment process. No evidence for fractional charge was found in a total of about 130 samples tested in these four stages. Samples containing positive and negative ions were tested separately, and concentration limits are reported for each of the stages. Levels in the region 0.01–0.1g^?1 were reached in stage 3, and 0.001 g^?1 in stage 4.     

The phase structure of the two-dimensionalN=2 Wess-Zumino model

We construct a convergent cluster expansion for the two-dimensionalN=2 Wess-Zumino model, in a region of parameter space where there are multiple phase. As a result of this expansion, we are able to construct the infinite volume field theory and demonstrate exponential decay of correlations. We are also able to investigate the different phases of the model, develop the phase diagram, and show that the free energy of each phase vanishes.Supported in part by National Science Foundation grants DMS 90-08827, PHY/DMS 88-16214 and DMS 88-58073Supported in part by National Science Foundation Mathematical Sciences Postdoctoral Research Fellowship DMS 88-07291     

An improved linearization strategy for zero-one quadratic programming problems

We present a new linearized model for the zero-one quadratic programming problem, whose size is linear in terms of the number of variables in the original nonlinear problem. Our derivation yields three alternative reformulations, each varying in model size and tightness. We show that our models are at least as tight as the one recently proposed in [7], and examine the theoretical relationship of our models to a standard linearization of the zero-one quadratic programming problem. Finally, we demonstrate the efficacy of solving each of these models on a set of randomly generated test instances.     

Synthesis and polymerization of a new nitrogen‐containing bis‐ortho‐diynylarene monomer

This study focuses on the preparation, characterization, and optical properties of new bis(3,4‐diphenylethynylphenyl)phenylamine. This is the first nitrogen‐containing bis‐ortho‐diynylarene (BODA) monomer having a nitrogen atom as the spacer group. BODA monomers are usually prepared from common bisphenols, thereby providing great synthetic versatility and the opportunity to develop a wide array of novel polyarylene thermosets by varying the aromatic spacer group. The new bis(3,4‐bisphenylethynylphenyl)phenylamine was synthesized in five steps. This compound emits an intense blue color (λ = 438 nm) upon irradiation by UV light and may be suitable for use as an emitting layer in electroluminescent devices. Bis‐(3,4‐bisphenylethynylphenyl)phenylamine and its polymer have photoluminescence quantum yields 34 and 38%, respectively, and long excited‐state lifetimes of 3.2 and 3.6 ns, respectively. The structure of the monomer and its polymer were characterized using spectroscopic techniques including Ultraviolet–visible Spectrophotometer, Photoluminescence Spectrophotometer, Fourier Transform infrared spectroscopy, and Gel Permeation Chromatography. The polymerizations were studied by Differential Scanning Calorimeter. The amount of weight loss and the thermostability of the nitrogen‐containing polymer were determined from thermogravimetric analysis. The electrical conductivity of neat HCl‐doped BODA‐derived polymer film was measured according to the standard four‐point probe technique. © 2006 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 44: 6988–6996, 2006     

Practical syntheses of [1,3,5]‐triazine dendritic molecules on solid supports

A practical and divergent synthesis of supported [1,3,5]‐triazine dendritic molecules on Wang resin, PEGA resin, SynPhase? Lanterns, and silica gel is described. The alkylamine linkers used allow derivatization with functionality for both synthetic (e.g., supported reagent and scavenger activity) and chemical biology applications. The use of supported intermediates allows differentiation of symmetric linkers without the need for protecting group chemistry. The synthetic route uses inexpensive, readily available starting materials in a straightforward and scaleable strategy. © 2006 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 44: 2248–2259, 2006