Ilimaquinone,a sesquiterpenoid quinone from a marine sponge

Ilimaquinone (1) is a new sponge metabolite of composition C₂₂H₃₀O₄. Its structure, which was determined by spectral correlations and X-ray crystallography, comprises a rearranged drimane sesquiterpene moiety linked to a 2-hydroxy-5-methoxybenzoquinone at C-3.     

Temperature dependence of acoustic impedance for specific fluorocarbon liquids

Recent studies by our group have demonstrated the efficacy of perfluorocarbon liquid nanoparticles for enhancing the reflectivity of tissuelike surfaces to which they are bound. The magnitude of this enhancement depends in large part on the difference in impedances of the perfluorocarbon, the bound substrate, and the propagating medium. The impedance varies directly with temperature because both the speed of sound and the mass density of perfluorocarbon liquids are highly temperature dependent. However, there are relatively little data in the literature pertaining to the temperature dependence of the acoustic impedance of these compounds. In this study, the speed of sound and density of seven different fluorocarbon liquids were measured at specific temperatures between 20 degrees C and 45 degrees C. All of the samples demonstrated negative, linear dependencies on temperature for both speed of sound and density and, consequently, for the acoustic impedance. The slope of sound speed was greatest for perfluorohexane (-278 +/- 1.5 cm/s-degrees C) and lowest for perfluorodichlorooctane (-222 +/- 0.9 cm/s-degrees C). Of the compounds measured, perfluorohexane exhibited the lowest acoustic impedance at all temperatures, and perfluorodecalin the highest at all temperatures. Computations from a simple transmission-line model used to predict reflectivity enhancement from surface-bound nanoparticles are discussed in light of these results.     

Combining NMR spectral and structural data to form models of polychlorinated dibenzodioxins,dibenzofurans, and biphenyls binding to the AhR

A three-dimensional quantitative spectrometric data-activity relationship (3D-QSDAR) modeling technique which uses NMR spectral and structural information that is combined in a 3D-connectivity matrix has been developed. A 3D-connectivity matrix was built by displaying all possible assigned carbon NMR chemical shifts, carbon-to-carbon connections, and distances between the carbons. Two-dimensional ¹³C-¹³C COSY and 2D slices from the distance dimension of the 3D-connectivity matrix were used to produce a relationship among the 2D spectral patterns for polychlorinated dibenzofurans, dibenzodioxins, and biphenyls (PCDFs, PCDDs, and PCBs respectively) binding to the aryl hydrocarbon receptor (AhR). We refer to this technique as comparative structural connectivity spectral analysis (CoSCoSA) modeling. All CoSCoSA models were developed using forward multiple linear regression analysis of the predicted ¹³C NMR structure-connectivity spectral bins. A CoSCoSA model for 26 PCDFs had an explained variance (r²) of 0.93 and an average leave-four-out cross-validated variance (q₄ ²) of 0.89. A CoSCoSA model for 14 PCDDs produced an r² of 0.90 and an average leave-two-out cross-validated variance (q₂ ²) of 0.79. One CoSCoSA model for 12 PCBs gave an r² of 0.91 and an average q₂ ² of 0.80. Another CoSCoSA model for all 52 compounds had an r² of 0.85 and an average q₄ ² of 0.52. Major benefits of CoSCoSA modeling include ease of development since the technique does not use molecular docking routines.     

Crystal-driven distortion of ligands in copper coordination complexes: conformational pseudo-enantiomers

The ligand in [Cu(6)CH3CN]-(ClO4)2 adopts two conformations that may be described as "pseudo-enantiomers" in that they possess approximately mirror-image molecular helicity, although they differ in the orientation of a single methyl substituent. The two conformations differ in energy as judged by analogy to other compounds studied previously, computation of the relative free energies of formation of the isomers, and measurement of solution circular dichroism spectra. The solid-state structures of both single enantiomer and racemic forms of the complex were determined by X-ray crystallography. In the chiral complex, a quasi-racemate was observed with both pseudo-enantiomeric conformers present in the asymmetric unit. Packing forces induce a higher energy conformation in order to achieve higher apparent symmetry in the solid state. In contrast, the racemic complex only displayed a single conformation corresponding to the lower energy one of the two observed in the single enantiomer structure.     

Ru(II)-catalyzed cascade reactions in stereocontrolled construction of rigid as-indacene-bridged bis(alpha-amino acid) derivatives

The key construction in the preparation of as-indacene-bridged bis(alpha-amino acid) derivatives was effected by a Ru(II)-catalyzed RCM cascade reaction of appropriately substituted triynes. The latter were available after stepwise and stereocontrolled alkynylations of (2R)-2,5-dihydro-2-isopropyl-3,6-dimethoxypyrazine as chiral auxiliary. The regio- and stereochemical transformations have been verified by a single-crystal X-ray analysis.     

Tuning and dissecting electronic and steric effects in ammonium receptors: nonactin vs artificial receptors

Ion selective electrodes (ISE) based on three different tripodal receptors (5, 6, and 7) have been investigated for sensing ammonium ion. Each receptor is based on three pyrazole groups that can accept three H-bonds from the bound ammonium ion. The receptor based on 4-bromo-3,5-dimethylpyrazole (6) is the most sensitive with a detection limit for ammonium ion of 2.5 x 10(-5) M at pH 8. The detection limits for the receptors based on 2,3-dimethylpyrazole (5) and unsubstitued pyrazole (7) are 1.0 x 10(-4) and 2.0 x 10(-4) M, respectively. The selectivities of the receptors 5, 6, and 7 for sensing ammonium ion over potassium ion (logK(NH)4+(/K)+) are -2.8, -2.3, and -1.7, respectively. In contrast, the detection limit and the selectivity of a nonactin-based ISE are 2.2 x 10(-5) M and -1.3, respectively. Crystallographic studies reveal that 6 accepts three H-bonds from the bound ammonium and singly protonated receptor 5 forms three H-bonds with the bound water molecule.     

A solid-phase approach to mouse melanocortin receptor agonists derived from a novel thioether cyclized peptidomimetic scaffold

The solid-phase synthesis of a novel thioether cyclized peptidomimetic scaffold, displaying functionality at the i to i + 3 positions, is reported. The thioether bridge is formed on-bead by an intramolecular reaction between a chloroacetylated reduced peptide bond and the free thiol from a cysteine. The crude products were obtained in moderate to very high purity. A series of 19 compounds were prepared and tested for agonist activity at the mouse melanocortin receptors 1, 3, 4, and 5 (mMC1-5R). From these results, several compounds were identified as having low micromolar agonist activity at the mMC1R and mMC4R. The former is involved in skin pigmentation and animal coat coloration. The latter is involved in the regulation of appetite and food intake and is currently a drug target for potential treatment of obesity. The most potent compound 1n with the pharmacophore motif "His-DPhe-Arg-Trp" was identified as having an EC(50) value of 165 nM at mMC1R, 7600 nM at mMC3R, 650 nM at mMC4R, and 335 nM at mMC5R. In addition, some of the compounds showed moderate selectivity for the mMC1R.     

Anomalous splittings of torsional sublevels induced by the aldehyde inversion motion in the S1 state of acetaldehyde

The G6 group-theoretical high-barrier formalism developed previously for internally rotating and inverting CH3NHD is used to interpret the abnormal torsional splittings in the S1 state of acetaldehyde for levels 14(0-)15(0), 14(0-)15(1), and 14(0-)15(2), where 14(0-) denotes the upper inversion tunneling component of the aldehyde hydrogen and 15 denotes the methyl torsional vibration. This formalism, derived using an extended permutation-inversion group G6m, treats simultaneously methyl torsional tunneling, aldehyde-hydrogen inversion tunneling and overall rotation. Fits to the rotational states of the four pairs of inversion-torsion vibrational levels (14(0+)15(0A,E), 14(0-)15(0A,E)), (14(0+)15(1A,E), 14(0-)15(1A,E)), (14(0+)15(2A,E), 14(0-)15(2A,E)), and (14(0+)15(3A,E), 14(0-)15(3A,E)) are performed, giving root-mean-square deviations of 0.003, 0.004, 0.004, and 0.004 cm(-1), respectively, which are nearly equal to the experimental uncertainty of 0.003 cm(-1). For torsional levels lying near the top of the torsional barrier, this theoretical model, after including higher-order terms, provides satisfactory fits to the experimental data. The partially anomalous K-doublet structure of the S1 state, which deviates from that in a simple torsion-rotation molecule, is fitted using this formalism and is shown to arise from coupling of torsion and rotation motion with the aldehyde-hydrogen inversion.