What are gene patents and why are people worried about them?

This article examines what it means to patent a gene. Numerous ethical concerns have been raised about the effects of such patents on clinical medical practice as well as on research and development. We describe what kinds of inventions are covered by human gene patents, give several examples and summarize the small body of empirical research performed in the US examining the effects of these patents. There is little evidence that early fears about gene patenting placing substantial restraints on research and clinical medicine have come to fruition. Nonetheless, there are areas of concern, and policy makers, physicians and the public should be alert to ensure that the net social benefits of patenting human genes are maintained.     

Structural Characterization of O‐ and C‐Glycosylating Variants of the Landomycin Glycosyltransferase LanGT2

The structures of the O‐glycosyltransferase LanGT2 and the engineered, C? C bond‐forming variant LanGT2S8Ac show how the replacement of a single loop can change the functionality of the enzyme. Crystal structures of the enzymes in complex with a nonhydrolyzable nucleotide‐sugar analogue revealed that there is a conformational transition to create the binding sites for the aglycon substrate. This induced‐fit transition was explored by molecular docking experiments with various aglycon substrates.     

Exceptional time response,stability and selectivity in doubly-activated phenyl selenium-based glutathione-selective platform

A phenyl-selenium-substituted coumarin probe was synthesized for the purpose of achieving highly selective and extremely rapid detection of glutathione (GSH) over cysteine (Cys)/homocysteine (Hcy) without background fluorescence. The fluorescence intensity of the probe with GSH shows a ∼100-fold fluorescent enhancement compared with the signal generated for other closely related amino acids, including Cys and Hcy. Importantly, the substitution reaction with the sulfhydryl group of GSH at the 4-position of the probe, which is doubly-activated by two carbonyl groups, occurs extremely fast, showing subsecond maximum fluorescence intensity attainment; equilibrium was reached within 100 ms (UV-vis). The probe selectivity for GSH was confirmed in Hep3B cells by confocal microscopy imaging.     

Selective glycoprotein detection through covalent templating and allosteric click-imprinting

Many glycoproteins are intimately linked to the onset and progression of numerous heritable or acquired diseases of humans, including cancer. Indeed the recognition of specific glycoproteins remains a significant challenge in analytical method and diagnostic development. Herein, a hierarchical bottom-up route exploiting reversible covalent interactions with boronic acids and so-called click chemistry for the fabrication of glycoprotein selective surfaces that surmount current antibody constraints is described. The self-assembled and imprinted surfaces, containing specific glycoprotein molecular recognition nanocavities, confer high binding affinities, nanomolar sensitivity, exceptional glycoprotein specificity and selectivity with as high as 30 fold selectivity for prostate specific antigen (PSA) over other glycoproteins. This synthetic, robust and highly selective recognition platform can be used in complex biological media and be recycled multiple times with no performance decrement.     

Dicyclohexylammonium bromoacetate: a low molecular mass organogelator with a one‐dimensional secondary ammonium monocarboxylate (SAM) synthon

The asymmetric unit of the title salt, C₁₂H₂₄N⁺·C₂H₂BrO₂⁻, contains a dicyclohexylammonium cation connected to a bromoacetate anion by means of an N—H...O hydrogen bond. In the crystal, the ion pairs assemble via N—H...O interactions, forming zigzag infinite chains parallel to the c axis with the (...H—N—H...O—C—O...)_n motif that is considered to be a prerequisite for ensuring gelation properties of secondary ammonium monocarboxylate salts. The title salt was characterized by FT–IR, X‐ray powder diffraction (XRPD), TG–DTA and ¹H NMR spectroscopy in solution. Gelation experiments revealed that dicyclohexylammonium bromoacetate forms molecular gels with dimethylformamide and dimethyl sulfoxide. Scanning electron microscopy (SEM) was used to reveal morphological features of dried gels.     

Asymmetric [3+2] Annulation Approach to 3‐Pyrrolines: Concise Total Syntheses of (−)‐Supinidine, (−)‐Isoretronecanol,and (+)‐Elacomine

An asymmetric [3+2] annulation reaction to form 3‐pyrroline products is reported. Upon treatment with lithium diisopropylamide, readily available ethyl 4‐bromocrotonate is deprotonated and trapped with Ellman imines selectively at the α‐position to yield enantiopure 3‐pyrroline products. This new method is compatible with aryl, alkyl, and vinyl imines. The efficacy of the method is showcased by short asymmetric total syntheses of (−)‐supinidine, (−)‐isoretronecanol, and (+)‐elacomine. This novel annulation approach also works for an aldehyde, thus providing access to a 2,5‐dihydrofuran product in a single step from simple precursors. By modifying the structure of the carbanion nucleophile, an asymmetric vinylogous aza‐Darzens reaction can be realized.     

Book Review

Nonlinear Dynamics -     

Slow Effects of Fast Harmonic Excitation for Elastic Structures

High-frequency excitation may affect the slow behavior of a dynamical system. For example, equilibria may move, disappear, or gain or loose stability. We consider such slow effects of fast excitation for a simple mechanical system that incorporates features of many engineering structures. The study is intended to contribute to the general understanding of periodically excited linear and nonlinear systems, as well as to the current attempts to utilize high-frequency excitation for altering the low-frequency properties of structures.     

Chaos and direct numerical simulation in turbulence

We show that direct numerical simulation will yield turbulent flowfields which are strongly dependent upon computer hardware and software. A computed flow trajectory is apparently uncorrelated to the true solution of a flowfield if it is allowed to evolve over a long time, and hence is called a pseudo-orbit. This is due to the trajectory instability of chaotic turbulent flows. All is not lost, however; a long-time average of flow quantities can now be computed using a pseudo-orbit by invoking the shadowing lemma. For the inviscid flow, this time average tends to approach asymptotically the phase average as predicted by the classical ergodic theorem. Although the inviscid two-dimensional flow has no real physical importance, the existence of canonical (equilibrium) distribution permits us to examine the accuracy of time averaging based on the pseudo-orbit and its inherent limitations.This work was supported by AFOSR task 2304N1.