Direct vinylation and difluorovinylation of arylboronic acids using vinyl- and 2,2-difluorovinyl tosylates via the Suzuki-Miyaura cross coupling

General reaction conditions were developed for the Pd(0)-catalyzed Suzuki-Miyaura coupling reaction of aryl boronic acids with a simple electrophilic vinylation reagent, vinyl tosylate, providing access to styrene derivatives in good yields. The easily accessible vinyl tosylate represents a stable and less toxic alternative to the vinyl halides and the triflate/nonaflate derivatives. Furthermore, this methodology was expanded to provide a facile and straightforward approach for the introduction of a gem-difluorovinyl substituent onto an aromatic ring using the similar and also readily available 2,2-difluorovinyl tosylate as the electrophilic complement.     

THAL, a sterically unhindered linker for the solid-phase synthesis of acid-sensitive protected peptide acids

The 5-(4-hydroxyphenyl)-3,4-ethylenedioxythienyl alcohol (THAL, Thiophene Acid Labile) is described as a new linker for the solid-phase synthesis of peptide carboxylic acids. It is based on the electron-rich 3,4-ethylenedioxythenyl (EDOTn) moiety and allows the obtention of free and tert-butyl-protected peptides by cleavage with 90% and 0.5% TFA, respectively. This very high acid lability makes it useful for the synthesis of sensitive peptides. Free and tert-butyl-protected Leu-enkephalins have been synthesized as models to demonstrate the utility of the linker.     

Mercury binding by ferrocenoyl peptides with sulfur-containing side chains: Electrochemical, spectroscopic and structural studies

Ferrocenoyl peptides incorporating amino acids derived from either l-methionine, l-cysteine or dl-homocysteine have been synthesised and investigated as agents for heavy metal binding and detection. Heavy metal-peptide interactions have been characterised using cyclic voltammetry to follow changes in the potential of the Fe(II)/Fe(III) redox couple, revealing that these systems interact with mercury(II) ions more strongly than with other thiophilic heavy metals such as cadmium(II), silver(I) and lead(II). Proton NMR experiments have demonstrated 1:1 peptide:mercury binding and enabled quantitative characterisation of this binding interaction. Crystal structures for two of these ferrocenoyl peptide derivatives have been elucidated, revealing that these compounds adopt a P-1,3′ open solid state conformation in the absence of mercury; this arrangement precludes intramolecular hydrogen bonding between chains, while extensive intermolecular hydrogen bonding is evident. The particular affinity of these systems for mercury(II) opens the possibility of incorporating them in new, biologically inspired sensors for detecting this toxic pollutant.     

Biosynthesis and structures of cyclomarins and cyclomarazines, prenylated cyclic peptides of marine actinobacterial origin

Two new diketopiperazine dipeptides, cyclomarazines A and B, were isolated and characterized along with the new cyclic heptapeptide cyclomarin D from the marine bacterium Salinispora arenicola CNS-205. These structurally related cyclic peptides each contain modified amino acid residues, including derivatives of N-(1,1-dimethylallyl)-tryptophan and delta-hydroxyleucine, which are common in the di- and heptapeptide series. Stable isotope incorporation studies in Streptomyces sp. CNB-982, which was first reported to produce the cyclomarin anti-inflammatory agents, illuminated the biosynthetic building blocks associated with the major metabolite cyclomarin A, signifying that this marine microbial peptide is nonribosomally derived largely from nonproteinogenic amino acid residues. DNA sequence analysis of the 5.8 Mb S. arenicola circular genome and PCR-targeted gene inactivation experiments identified the 47 kb cyclomarin/cyclomarazine biosynthetic gene cluster (cym) harboring 23 open reading frames. The cym locus is dominated by the 23 358 bp cymA, which encodes a 7-module nonribosomal peptide synthetase (NRPS) responsible for assembly of the full-length cyclomarin heptapeptides as well as the truncated cyclomarazine dipeptides. The unprecedented biosynthetic feature of the megasynthetase CymA to synthesize differently sized peptides in vivo may be triggered by the level of beta oxidation of the priming tryptophan residue, which is oxidized in the cyclomarin series and unoxidized in the cyclomarazines. Biosynthesis of the N-(1,1-dimethyl-2,3-epoxypropyl)-beta-hydroxytryptophan residue of cyclomarin A was further illuminated through gene inactivation experiments, which suggest that the tryptophan residue is reverse prenylated by CymD prior to release of the cyclic peptide from the CymA megasynthetase, whereas the cytochrome P450 CymV installs the epoxide group on the isoprene of cyclomarin C post-NRPS assembly. Last, the novel amino acid residue 2-amino-3,5-dimethylhex-4-enoic acid in the cyclomarin series was shown by bioinformatics and stable isotope experiments to derive from a new pathway involving condensation of isobutyraldehyde and pyruvate followed by S-adenosylmethionine methylation. Assembly of this unsaturated, branched amino acid is unexpectedly related to the degradation of the environmental pollutant 3-(3-hydroxyphenyl)propionic acid.     

Synthesis and DFT study of the spectral behavior of new 4‐hydroxycoumarins

4‐Hydroxycoumarins are compounds with a lot of applications as drugs and herbicides. They have very interesting spectral and chemical properties, which are investigated theoretically and experimentally. Some new 4‐hydroxycoumarins with arylydene‐β‐ketoester or arylydene‐2,4‐pentanedione side chain were synthesized by two step synthetic scheme. Their structure was characterized by UV–vis, IR, and ¹H NMR methods. The spectral behavior of the optimized structures of these compounds was reproduced by the hybrid DFT methods B3LYP and B3P86 with 6‐31G** and aug‐cc‐pVDZ basis sets. Electronic excited states and vibrational frequencies were calculated. HF method was also used for comparison, because of the lack of electronic correlation. The theoretical spectra were compared with the experimental ones. A lot of compounds show good agreement between experimental and some of the theoretical data, especially obtained by aug‐cc‐pVDZ basis set. © 2008 Wiley Periodicals, Inc. Int J Quantum Chem, 2008     

Potato glycoalkaloids in soil-optimising liquid chromatography-time-of-flight mass spectrometry for quantitative studies

Potato glycoalkaloids are produced in high amounts in potato fields during the growth season and losses to soil potentially impact shallow groundwater and via tiles to fresh water ecosystems. A quantitative liquid chromatography-electrospray ionization time-of-flight mass spectrometry (LC-ESI-TOF-MS) method for determination and quantification of potato glycoalkaloids and their metabolites in aqueous soil extracts was developed. The LC-ESI-TOF-MS method had linearities up to 2000microg/L for alpha-solanine and alpha-chaconine and up to 760microg/L for solanidine. No matrix effect was observed, and the detection limits found were in the range 2.2-4.7microg/L. The method enabled quantification of the potato glycoalkaloids in environmental samples.     

(-)-（3S, 6R）-3, 6-羟基-10-甲基十一酸及其三聚体的全合成

以廉价易得的异戊基溴为起始原料,以烯丙基二异松莰烷基硼烷参与的不对称烯丙基化反应和Yamaguchi酯化反应为关键步骤,实现了对(-)-(3S,6R)-3,6-二羟基-10-甲基十一酸(总收率27.5％)及其三聚体(总收率24.5％)的不对称全合成。     

Carbene proton attachment energies: theoretical study

The geometries and electronic energies of six singlet carbenes, with methyl and phenyl substituents, and the corresponding carbenium ions were obtained using several density functional theory (DFT) variants and the second-order M?ller-Plesset method for electron correlation and compared with G3 results, with the aim to determine a relatively low-cost computational protocol that is sufficiently accurate for the specific molecules and ions of interest. Some additional calculations were performed at the CCSD(T) level. Results for diphenylcarbene, methylphenylcarbene, and their cations, which were not previously investigated by ab initio methods, are reported as are calculations on methylene, methylcarbene, dimethylcarbene, and phenylcarbene. The MPW3LYP/6-311+G(d,p) hybrid DFT level was found to give results that were in close agreement with those obtained using G3 theory, with a mean absolute deviation (MAD) of 1.76 kcal/mol for the calculated proton attachment energies (PAEs). Equilibrium geometries obtained with this method were compared with those obtained at the MP2/6-311G(d,p) level of theory, and bond lengths and bond angles had MADs of 0.005 A and 1.0 degrees, respectively. Harmonic vibrational frequencies of all the carbene molecules and the corresponding ions were computed to verify that the stationary points were true minima, to obtain zero-point corrected energies, to assist in infrared studies of the molecules. The recommended combination of method and basis set is expected to be a useful framework that uses modest amounts of computer resources to obtain usable thermochemical data on moderate-sized hydrocarbons and hydrocarbon cations, including coal-mimetic species.     

Naravelia zeylanica [corrected] occurrence of primary benzamides in flowering plants

Extract of Naravelia zeylanica (Ranunculaceae) yielded three simple benzamides, 3,4-methylenedioxybenzamide, 4-methoxybenzamide and 4-hydroxy-3-methoxybenzamide. These simple C6C1 metabolites have been encountered as natural products for the first time. The compounds were identified by direct comparison of their spectral (1H- and 13C-NMR) and chromatographic (GCMS) data with those of authentic samples. Authentic 4-hydroxy-3-methoxybenzamide was synthesized in one step by treatment of 4-hydroxy-3-methoxybenzonitrile with sodium perborate. Authentic 3,4-methylenedioxybenzamide was synthesized from the corresponding acid.     

On the accuracy of numerical Hartree–Fock energies

It is demonstrated that numerical Hartree–Fock (HF) energies reported in the literature in some cases have errors in the milliHartree range. The main cause of these errors is due to the use of too small a value for the practical infinity parameter in the finite difference method for generating the results. By systematically investigating the convergence with respect to the computational parameters, HF energies accurate to at least 1 microHartree are generated for 42 diatomic systems containing first and second row elements, encompassing both cationic, neutral and anionic systems.