Calculation of number and free energy of the conformers of linear alkanes with medium and long chains. Implications for catalysis

A method for calculating the number of rotamers of a linear alkane and of the number of rotamers with a given number of gauche conformations along the chain as a function of the total number of atoms in the chain, using general equations, is presented. A graphical method for generating individual rotamers was applied to the homologs up to decane, which has 1134 rotamers. The steric energies calculated by molecular mechanics (MM2 force field) were used as measures of the heat of formation for the coiled conformations relative to the anti conformer for each molecule, whereas the statistical entropy differences were calculated for classes of coiled rotamers grouped by the number of gauche bonds and steric energy. The free energy values calculated from these components show that already at 400 K hexane exists preferentially in conformations containing gauche bonds. For larger chains the free energy advantage for the coiled chains increases very steeply. The implications for the question of reactions of linear alkanes occurring on the surface or inside the channels of small- and medium-pore zeolites are briefly examined.     

Another independent self-dual basis for the trivial variety

We give a new independent self-dual 3-basis for the trivial variety with two binary operations. Received October 24, 2006; accepted in final form January 25, 2007.     

Mode-locking dynamics of a laser coupled to an empty external cavity

The effect of incorporating an empty external cavity into the feedback loop of a mode-locked laser is investigated. Particular attention is paid to the response of the mode-locking as the external cavity is detuned by a fraction of a wavelength from the round trip transit time associated with the laser. The results for two regimes of operation are presented. In the first case a series of short lived transients develop whereas the other case leads to a persistent intermittent Q-switching scenario, where mode-locking fails. The role of coupling between the cavities and the laser's memory time in relation to the results is discussed. A mechanism for the improved mode-locking observed with non-linear external cavities is suggested.     

The use of combined LC-GC for the analysis of fuel products: A review

A review of the analysis of petroleum fuels, oils, tars and engine exhaust particulate extracts by on-line coupled LC-GC is presented.     

Progress in the quality assurance of environmental trace organic analysis

An overview is given on the stepwise learning programmes undertaken to identify the main sources of error associated with the determination of the mandatory organic contaminants in the marine monitoring programmes. Details are given on the preparation and use of LRMs and CRMs to maintain analytical control and quantify the laboratory errors in relation to the measurement of changes in the environment.     

Novel antibiotics: second generation macrocyclic peptides designed to trap Holliday junctions

Described are the syntheses of 15 macrocyclic peptides designed to trap Holliday junctions (HJs) in bacteria during site-specific and homologous recombination. This leads to inhibiting bacterial growth. These second generation macrocycles were based on the C-2 symmetrical HJ. They were synthesized using a strategy that permits elucidation of the amino acid role in binding HJs. The syntheses of these macrocycles are an important step in the development of a new class of antibiotics.     

2,4,6‐Trifluoropyrimidine. Reactions with nitrogen nucleophiles

In a continuation of our studies involving the nucleophilic displacement of one of the chlorines from 2,4,6‐trichloropyrimidine, we now report the initial displacement of one of the fluorine atoms from 2,4,6‐trifluoropyrimidine using both aliphatic and aromatic amines. The monosubstitution products favor 2‐substitution with ammonia and ethanolamine while aniline gave the 4‐substituted derivative as the preferred product.     

Structure and catalytic activity of some soluble polyethylene glycol-peptide conjugates

Soluble catalysts for the Juliá-Colonna asymmetric epoxidation reaction have been constructed in three different ways, using NH₂-PEG-OMe as the support system: suitable solvents have been identified and it is shown that the degree of helicity of the conjugates correlates with the extent of conversion and (to a lesser extent) the enantioselectivity of epoxidation.     

Four unit linking groups IV. Liquid crystals of positive dielectric anisotropy

Three separate series of new materials of weak to strongly positive dielectric anisotropy have been prepared. Each series contains four sub-sets of materials each incorporating a different four unit linking group (i.e., C₄H₈, C₄H₆, C₃H₆O and C₃H₄O) and the same series of end groups (i.e. F, CN and OCF₃) in various substitution patterns. The synthesis and liquid crystal transition temperatures of these novel substances are described and compared with those of the corresponding materials incorporating standard central linkages (i.e.-, C₂H₄, CH₂O, COO). The effect of an additional trans carbon-carbon double bond in the terminal alkyl chain and in the central linking unit has also been studied.     

Effect of stoichiometry on liquid crystalline supramolecular polymers formed with complementary nucleobase pair interactions

We report herein studies on the liquid crystalline behavior of a series of supramolecular materials that contain different ratios of two complementary symmetrically-substituted alkoxy-bis(phenylethynyl)benzene AA- and BB-type monomers. One monomer has thymine units placed at either end of the rigid mesogenic core, while the other has N⁶-(4-methoxybenzoyl)-adenine units placed on the ends. Differential scanning calorimetric and polarized optical microscopy studies have been carried out on these systems. These studies show that the material's behavior is strongly dependent on its thermal history. As a result, the materials can exhibit, on heating, either a liquid crystalline phase, a crystalline phase, or the coexistence of crystalline and liquid crystalline regions. © 2006 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 44: 5049–5059, 2006