β‐Peptide Conjugates: Syntheses and CD and NMR Investigations of β/α‐Chimeric Peptides,of a DPA‐β‐Decapeptide,and of a PEGylated β‐Heptapeptide

β³‐Peptides consisting of six, seven, and ten homologated proteinogenic amino acid residues have been attached to an α‐heptapeptide (all d‐ amino acid residues; 4 ), to a hexaethylene glycol chain (PEGylation; 5c ), and to dipicolinic acid (DPA derivative 6 ), respectively. The conjugation of the β‐peptides with the second component was carried out through the N‐termini in all three cases. According to NMR analysis (CD₃OH solutions), the (M)‐3₁₄‐helical structure of the β‐peptidic segments was unscathed in all three chimeric compounds (Figs. 2, 4, and 5). The α‐peptidic section of the α/β‐peptide was unstructured, and so was the oligoethylene glycol chain in the PEGylated compound. Thus, neither does the appendage influence the β‐peptidic secondary structure, nor does the latter cause any order in the attached oligomers to be observed by this method of analysis. A similar conclusion may be drawn from CD spectra (Figs. 1, 3, and 5). These results bode well for the development of delivery systems involving β‐peptides.     

Molecular Dynamics Simulations of Small Peptides: Can One Derive Conformational Preferences from ROESY Spectra?

Folding properties of beta-peptides were investigated by means of NMR experiments and MD simulations of beta-dipeptides, which serve as small test systems to study the influence of stereocenters and side chains on hydrogen-bond and consequently on secondary-structure formation. Two stereoisomers, SR and SS, of a Val-Phe dipeptide, and of the corresponding Ala-Ala dipeptide, and a Gly-Gly dipeptide were simulated in methanol for 40 ns. In agreement with experiment, the isomers of the Val-Phe dipeptide adopt quite different conformers at 298 K, the differences being reduced at 340 K. Interestingly, the SR isomer shows enhanced hydrogen bonding at the higher temperature. The adopted conformations are primarily determined by the R or S side chain substitution, and less by the type of side chain. Back-calculation of (1)H ROESY spectra and (3)J coupling constants from the MD simulations and comparison with the experimental data for the Val-Phe dipeptides shows good agreement between simulation and experiment, and reveals possible problems and pitfalls, when deriving structural properties of a small and extremely flexible molecule from NMR data only. Inclusion of all aspects of internal dynamics is essential to the correct prediction of the NMR spectra of these small molecules. Cross comparison of calculated with experimental spectra for both isomers shows that only a few out of many ROESY peaks reflect the sizeable conformational differences between the isomers at 298 K.     

Studies on the tricyanocyclopropenyl system

Chlorination of tricyanocylopropane is observed to lead directly to trichlorotricyanocyclopropane which undergoes a remarkable reductive conversion to hexacyanobenzene. The synthesis of mono- and dichlorotricyanocyclopropane ($\text{4}$ and $\text{5}$) and their use as potential precursors for tricyanocyclopropenyl anion is described.     

Crack propagation in rock plates loaded by projectile impact

Photoelastic coatings were bonded to limestone and granite plates which were then struck on edge with a steel projectile. The resulting fracture zone growth was observed with a reflecting polariscope and recorded with an image converter camera. It is shown that the maximum velocity at which cracks propagate under these circumstances is very much higher than predicted by quasi-steady theories. ‘Apparent’ supervelocity cracks can be generated by shock reflection from bounding interfaces, producing tensile waves of sufficient amplitude to activate and join isolated flaw. Photoelastic coatings are also shown to very much enhance surface-crack visualization subsequent to impact.     

On the Photochemistry of 12,13-Didehydrosqualene

The photochemical formation of bicyclooctenes b from 12,13-didehydrosqualene ( 1 ) upon irradiation at wavelengths longer than 290 nm is reported. The same photoreaction is also observed with trienes 7 and 8 which like 1 have a remote double bond two C-atoms removed from the triene system. A configurational assignment for bicyclooctene 10 obtained from 8 and a mechanism for the observed photochemical reaction are proposed.     

Coenzyme F430 from Methanogenic Bacteria: Detection of a Paramagnetic Methylnickel(II) Derivative of the Pentamethyl Ester by 2H-NMR Spectroscopy

A methylnickel(II) derivative of coenzyme F430 ( 1 ) was proposed as an intermediate in the enzymic process catalyzed by methyl-CoM reductasc. Indirect evidence points to formation of CH₃–F430M^II in the reaction of F30M¹ (obtained from F430M^II ( 2 )) with eleclrophilic methyl donors. The results presented here show, that such a compound does exist. A paramagnetic CD₃–Ni^II derivative 5b of the pentamethyl ester 2 (F430M) of coenzyme F430 was prepared by in situ methylation with (CD₃)₂Mg and characterized by its isotropically shifted ²H-NMR spectrum. At ?40°, the very broad D-signal of the axially coordinated CD₃ group is found at ?490 ppm. Comparison with the ²H- and ¹H-NMR spectra of mcthyl(tetramethylcyclam)nickel(II) derivatives 4 ([Ni^II(CH₃))(tmc)]CF₃SO₃ ( 4a ) is the only isolated CH₃–Ni derivative of a N₄macrocyclic Ni^II complex' shows that the large isotropic shift to high field is characteristic for a Me group axially bound to the Ni center. The temperature dependence of the isotropic shift of the CD₃–Ni group in both 4b and 5b follows Curie's law and yields ²H hyperfine coupling constants of ?0.65 ( 4b ) and ?0.85 MHz ( 5b ), respectively. The ¹H-NMR spectrum indicates that, in contrast to the five-coordinate monochloro complex [Ni^IICl(tmc)]⁺, intermolecular exchange of the axial ligand in [Ni^II(CH₃)(tmc)]⁺ 4a is either slow at the NMR time scale or does not occur at all.     

Design, synthesis and structural investigations of a beta-peptide forming a 314-helix stabilized by electrostatic interactions

Two different strategies have been employed for the synthesis of Fmoc-protected beta(3)-homoarginine; the Arndt-Eistert homologation of alpha-arginine and the guanidinylation of beta(3)-homoornithine. Solid-phase beta-peptide synthesis was used for the preparation of beta-heptapeptide 1, which was designed to form a helix stabilized by electrostatic interactions through positively (beta(3)hArg) and negatively charged (beta(3)hGlu) amino acid residues. CD measurements and corresponding NMR investigations in MeOH and aqueous solutions do indeed show that the beta-peptidic 3(14)-helix can be stabilized by salt-bridge formation.     

‘Mixed’ β-peptides: A unique helical secondary structure in solution. Preliminary communication

β-Hexapeptides 1–5 and a β-dodecapeptide 6 with sequences containing two different types of β-amino acids (aliphatic proteinageous side chains in the 2- or in the 3-position) have been prepared. CD (Fig. 1) and NMR measurements indicate that, with one exception, the secondary structures formed by these new β-peptides differ from those of isomers studied previously. Detailed NMR analysis of the β-hexapeptide 5 (with alternating β²,β³-building blocks) and molecular-dynamics simulations have produced a minimum energy conformation (Fig. 2,b)which might be described as a novel irregular helix containing ten- and twelve-membered H-bonded rings. This demonstrates the great structural variability of β-peptides, since three different helical secondary structures have been discovered to date.     

Peralkynylated buta-1,2,3-trienes: exceptionally low rotational barriers of cumulenic C=C bonds in the range of those of peptide C--N bonds

A variety of 1,1,4,4-tetraal kynylbutatrienes and 1,4-dialkynylbutatrienes was synthezized by dimerization of the corresponding gem-dibromoolefins. Both (1)H and (13)C NMR spectroscopy indicated that the di- and tetraalkynylated butatrienes are formed as a mixture of cis and trans isomers. Variable temperature NMR studies evidenced a facile cis-trans isomerization, thus preventing the separation of these isomers by gravity or high-performance liquid chromatography (HPLC). For 1,1,4,4-tetraalkynylbutatrienes, the activation barrier deltaG( not equal ) was measured by magnetization transfer to be around 20 kcal mol(-1), in the range of the barrier for internal rotation about a peptide bond. Unlike the tetraalkynylated [3]cumulenes, 1,4-dialkynylbutatrienes are more difficult to isomerize and could, in one case, be obtained isomerically pure. Based on experimental data, the rotational barrier DeltaG( not equal ) for 1,4-dialkynylbutatrienes is estimated to be around 25 kcal mol(-1). The hypothesis of a stabilizing effect of the four alkynyl substituents on the proposed but-2-yne-1,4-diyl singlet diradical transition state of this cis-trans isomerization is further supported by a computational study.     

Zur Kenntnis des Faktors F430 aus methanogenen Bakterien: Struktur des porphinoiden Ligandsystems

Factor F430 from Methanogenic Bacteria: Structure of the Porphninoid Ligand System A structure is proposed for F430M, a non-cristalline methanolysis product of isolates of the nickel-containing, porphinoid factor F430 from Methanobacterium thermoautotrophicum. Crucial to the structure determination are five incorporation experiments with M. thermoautotrophicum (strain Marburg) in which the specifically mono-¹³C-labeled biosynthetic precursors (2-¹³C), (3-¹³C), (4-¹³C)-, (5-¹³C) ALA (ALA = δ-amino-levulinic acid) and L-(methyl-¹³C)methionine were incorporated into F430 with high efficiency. The ¹³C-NMR,-spectra of the specifically labeled F430M samples derived therefrom, together with the UV./VIS. spectral data of F430M, contain all the information necessary for the deduction of the constitution of the F430M chromophore, assuming the established pattern of porphinoid biosynthesis to be operative in F430 biosynthesis. ¹H-NMR. spectroscopy and, in particular, ¹H-NMR.-NOE-difference spectroscopy corroborates and completes the constitutional assignments and, furthermore, makes possible an almost complete derivation of the molecule's relative configuration. Schemes 3 and 4 summarize the results of ¹H-NMR. spectroscopy, presenting them within the context of the proposed structure for F430M. The assignment of absolute configuration implied in the formula is given preference because of F430M's very close structural and (assumed) biosynthetic relationship to sirohydrochlorin and vitamin B₁₂ (with respect to ring C, the assignment is based on degradative evidence). According to the proposed structure, the nickel complex F430M possesses an uroporphinoid (Type III) ligand skeleton with an additional carbocyclic ring and a chromophore system not previously encountered among natural porphinoids. It can be considered to be a (tetrahydro) derivative of the corphin system, combining structural elements of both porphyrins and corrins.