Engineering crystals by the strategy of molecular tectonics

Detailed structures of molecular crystals cannot yet be predicted with consistent accuracy, but the strategy of molecular tectonics offers crystal engineers a powerful tool for designing molecules that are predisposed to form crystals with particular structural features and properties.     

Electrode processes in the oxidation of tetrahydroisoquinoline derivatives

The electrochemical oxidation of the alkaloid laudanosine (Ia) to O-methylflavinantine (II) has been studied in acetonitrile solvent. Using cyclic voltammetry, rotating disc voltammetry and preparative electrolyses on several alkaloids, simple aliphatic amines and aromatic compounds, some aspects of the mechanism of this coupling reaction are elucidated. The first anodic wave for laudanosine at platinum has E_p=0.55 V vs. Ag/Ag⁺. The electrode rapidly becomes partially passivated at potentials above 0.5 V. This is due to a film which “dissolves” below 0.5 V, at a rate independent of the potential. It is shown that the reaction (Ia)→(II) proceeds at 0.5 V by initial oxidation of the amine moiety. If acids such as sodium bicarbonate are added to the anolyte the amine is protonated causing the first wave to disappear. Oxidation at 1.1 V under these acidic conditions produces the same product, but more rapidly and in significantly higher yield because electrode filming and side reactions resulting from the amine oxidation are abrogated.     

Asymmetric induction in Diels-Alder reactions of o-quinodimethanes

Asymmetric inductive effects have been measured on the Diels-Alder reaction of dimethyl fumarate with o-quinodimethane bearing a chiral α-alkoxy group. The chiral substituents used were 1-phenylethoxy, 2-(1-phenyl)propoxy, 1-(2-phenyl)propoxy, 2-(4-phenyl)-butoxy and 1-cyclohexylethoxy. The greatest asymmetric induction was found with the first of these chiral substituents (47% ee). A π-stacking effect, previously suggested as the rationale for asymmetric induction in a similar system, is shown to be inconsistent with the results from this study.     

Mass spectra of perfluoroalkyl and perfluoroalkylether nitriles and acyl halides

Electron impact fragmentation patterns were obtained for perfluoroalkylether nitriles, C,F,O[CF(CF₃)CFIO]ICF(CF₃)CN (x = 1 and 2), perfluoroalkylether acyl halides, CSF,OCF(CF,)-CF₂OCF(CF₃)COX (X = F and Cl), n-perfluorooctanonitrile and n-perfiuorooctanoyl chloride. The perfluoroalkyl and perfluoroalkylether nitriles afforded ions characteristic of the nitrile function. The major fragment from the acyl chlorides was the [COClJ]+ ion; the presence of chlorine was evidenced also by rearrangement ions of the general form [R_fCl] t. The perfluoroalkylether compounds appeared to undergo a typical fragmentation governed by the cleavage of the carbon-oxygen bond.     

Fitting tabulated current functions to linear-sweep voltammograms

A procedure is described for fitting tabulated theoretical current functions to linear-sweep voltammograms. The method, suitable for a small microcomputer, employs linear extrapolation between current function values, and non-linear regression for minimizing deviations between experimental and theoretical currents. Examples of its use for confirmation of simple electrode reaction mechanisms and estimation of electrochemical parameters are described.     

Guest sorption and desorption in the metal-organic framework [Co(INA)(2)] (INA=isonicotinate)--evidence of intermediate phases during desorption

The metal-organic framework [Co(INA)(2)]x0.5EtOH (INA = isonicotinate, NC(5)H(4)-4-CO(2)(-)), was synthesised under solvothermal conditions. Its X-ray crystal structure shows channels containing ethanol guests which are hydrogen-bonded to carboxylate oxygens of the framework. The pyridyl rings of the framework alternate between 'open' and 'closed' positions along the channels resulting in large variation in the channel cross-sectional area from ca. 1.4 by 2.3 A at the narrowest point to 4.9 by 5.3 A at the widest. Despite the very small windows, the ethanol guests (of van der Waals diameter ca. 4.2-6.1 A) may be reversibly desorbed and sorbed into the structure quantitatively, as shown by in situ variable-temperture IR spectroscopy and XRPD. The single-crystal structure of the desolvated form [Co(INA)(2)] shows that there is no change in the overall connectivity on desolvation, but the rotational positions of the pyridine rings are altered. This suggests that pyridyl rotation may occur to allow guests to pass in and out. When the synthesis was conducted in 1-propanol solvent [Co(INA)(2)]x0.5Pr(n)OHxH(2)O, was obtained, and a single-crystal X-ray structure revealed the same overall connectivity as in but with pyridine rings disordered over closed and open positions. There was no evidence of included guests from X-ray crystallography, suggesting that they are also highly disordered. Variable-temperature XRPD performed on bulk samples showed peaks which were unsymmetrical and exhibited shoulders, suggesting that for each pattern obtained the material actually consisted of several closely-related phases. The movements of the peaks during desolvation showed the presence of intermediate phases before the final desolvated product was formed. The peak positions of the intermediate phases matched more closely with the calculated pattern for than with or, suggesting that they may have disordered structures similar to. The results also suggest that the intermediate phase represents an initial increase in volume before a larger decrease in volume occurs to give the final desolvated material.     

Computational study on the ring-opening reaction of protonated oxirane and methylpropene

A computational study on the intermolecular reaction of protonated oxirane with methylpropene, as a model for initiation of oxidosqualene cyclisation, shows that the S_N2-like ring opening is strongly exothermic with a low barrier to reaction and establishes the geometry of the intermolecular reaction.     

Comparative studies of electron-impact (EI) and field ionization (FI) mass spectra of pentaerythritol derivatives

The EI Mass spectra of the polyfunctional pentaerythritol derivatives show that the molecular ions [M]⁺· exhibit extensive ion fragmentation. No Information about [M]⁺·. can be obtained. In Contrast to this, the FI Mass spectra of these compounds show intense [M]⁺· and/or [M + 1]⁺, and a characteristic ion at m/e 31, which is assumed to be the oxonium ion \documentclass{article}\pagestyle{empty}\begin{document}$ {\rm CH}_2 = \mathop {\rm O}\limits^ + {\rm H} $\end{document}. Because of surface adsorption and field attraction, FI mass spectrometry presents a serious problem in quantitative analysis of a mixture containing compounds with quite different degrees of polarization.     

Amide-water interactions in cosolvent systems. I. Solubilities and apparent molar volumes of methyl paraben

Solubility and apparent molar volume data are used to demonstrate effects of amide alkylation on amide-water interactions at 25° C. Precise measurements were made of the apparent molar volumes of the amides in binary amide-water mixtures using a dilatometric technique. The results show that the apparent molar volumes of alkyl-substituted amides in water pass through a minimum at an amide concentration which varies inversely with the degree of alkylation. Further studies showed that the solubilities of methyl paraben (methyl-p-hydroxybenzoate) and naphthalene in various amide-water solvent systems increased in characteristic fashion with amide alkylation.     

Photon-induced dissociation with a four-sector tandem mass spectrometer

The feasibility of using photodissociation of protonated peptide molecules to sequence specific fragment ions with a 193-nm pulsed laser beam in a magnetic deflection tandem mass spectrometer of EBEB configuration was demonstrated. Although the short pulse (15 ns) and low repetition rate (100 Hz) of the excimer laser permitted the irradiation of only ～ 0.02% of the (M + H)⁺ ions exiting MS-1, a photon-induced decomposition spectrum of the heptapeptide angiotensio III (M _r 930.5) was produced that was practically the same (but with better signal-to-noise ratio) as that generated by collision-activated dissociation at the same low duty cycle. Because of the low and pulsed fragment ion currents, an array detector was used to record the spectra. A dependence between laser power and abundance of fragment ions was observed (increased power increases the relative abundance of ions of low mass). Laser power was varied from 6 to 80 mJ. Formation of fragment ions from a large peptide (melittin, M, 2844.75) was also observed. The results permit the design of modifications that may increase the fragment ion yield to 10% or higher, which would make photon-induced decomposition a useful method for magnetic deflection mass spectrometers.