Accuracy and tractability of a kriging model of intramolecular polarizable multipolar electrostatics and its application to histidine

We propose a generic method to model polarization in the context of high‐rank multipolar electrostatics. This method involves the machine learning technique kriging, here used to capture the response of an atomic multipole moment of a given atom to a change in the positions of the atoms surrounding this atom. The atoms are malleable boxes with sharp boundaries, they do not overlap and exhaust space. The method is applied to histidine where it is able to predict atomic multipole moments (up to hexadecapole) for unseen configurations, after training on 600 geometries distorted using normal modes of each of its 24 local energy minima at B3LYP/apc‐1 level. The quality of the predictions is assessed by calculating the Coulomb energy between an atom for which the moments have been predicted and the surrounding atoms (having exact moments). Only interactions between atoms separated by three or more bonds (“1, 4 and higher” interactions) are included in this energy error. This energy is compared with that of a central atom with exact multipole moments interacting with the same environment. The resulting energy discrepancies are summed for 328 atom–atom interactions, for each of the 29 atoms of histidine being a central atom in turn. For 80% of the 539 test configurations (outside the training set), this summed energy deviates by less than 1 kcal mol^?1. © 2013 Wiley Periodicals, Inc.     

The intercalated smectic A phase. The liquid crystal properties of the α-(4-cyanobiphenyl-4′-yloxy)-ω)-(4-alkyloxycinnamoate)alkanes

Abstract

A novel system of non-symmetric dimers containing 4-n-alkyloxy-substituted cinnamic acid and cyanobiphenyl groups has been studied. Two series were prepared: in one the flexible spacer was varied in length while the spacer was fixed. The spacer length has a profound influence on the nematic-isotropic transition temperature of these materials and a large odd-even effect is observed for the series. The terminal chain also plays a significant role in determining the liquid crystal phase behaviour: a smectic A phase is exhibited for the ethyl and propyl homologues, in addition to a nematic phase; this smectic phase vanishes for intermediate chain lengths but then reappears for the nonyl and decyl members of the series. X-ray diffraction has revealed the structure of the smectic A phase for the ethyl homologue to be intercalated, whereas that for the decyl compound is interdigitated. The existence of the intercalated smectic A phase has previously been explained in terms of a charge-transfer interaction between unlike mesogenic groups. However, for the non-symmetric liquid crystal dimers described here this specific interaction appears unlikely and we discuss, therefore, other possible mechanisms for the formation of intercalated smectic phases.     

Quantum design of ionic liquids for extreme chemical inertness and a new theory of the glass transition

In many modern technologies (such as batteries and supercapacitors), there is a strong need for redox-stable ionic liquids. Experimentally, the stability of ionic liquids can be quantified by the voltage range over which electron tunneling does not occur, but so far, quantum theory has not been applied systematically to this problem. Here, we report the electrochemical reduction of a series of quaternary ammonium cations in the presence of bis(trifluoromethylsulfonyl)imide (TFSI) anions and use nonadiabatic electron transfer theory to explicate the results. We find that increasing the chain length of the alkyl groups confers improved chemical inertness at all accessible temperatures. Simultaneously, decreasing the symmetry of the quaternary ammonium cations lowers the melting points of the corresponding ionic liquids, in two cases yielding highly inert solvents at room temperature. These are called hexyltriethylammonium TFSI (HTE-TFSI) and butyltrimethylammonium TFSI (BTM-TFSI). Indeed, the latter are two of the most redox-stable solvents in the history of electrochemistry. To gain insight into their properties, very high precision electrical conductivity measurements have been carried out in the range +20 °C to +190 °C. In both cases, the data conform to the Vogel-Tammann-Fulcher (VTF) equation with “six nines” precision (R ²?>?0.999999). The critical temperature for the onset of conductivity coincides with the glass transition temperature T _g. This is compelling evidence that ionic liquids are, in fact, softened glasses. Finally, by focusing on the previously unsuspected connection between the molecular degrees of freedom of ionic liquids and their bulk conductivities, we are able to propose a new theory of the glass transition. This should have utility far beyond ionic liquids, in areas as diverse as glassy metals and polymer science.     

Synthesis of diverse 2,3-dihydroindoles, 1,2,3,4-tetrahydroquinolines, and benzo-fused azepines by formal radical cyclization onto aromatic rings

2,3-Dihydroindoles, 1,2,3,4-tetrahydroquinolines, and 2,3,4,5-tetrahydrobenzo[b]azepines are available by a process that represents formal radical cyclization onto aromatic rings. Optically pure benzo-fused heterocycles are also accessible by this method. p-Iodophenols, especially those with the phenolic oxygen protected as a MOM-ether, can be coupled with amino alcohols to produce N-aryl amino alcohols, which can be converted into the corresponding alkyl iodides in which the nitrogen is protected as a carbamate. These compounds give cross-conjugated ketones after removal of the phenolic protecting group and oxidation with PhI(OAc)(2) in the presence of MeOH. The ketones undergo 5-, 6- or 7-exo-trigonal radical cyclization, and then exposure to acid, or sequential treatment with a Grignard reagent and then acid, effects rearomatization to produce the benzo-fused nitrogen heterocycles.     

Rhodium-Catalyzed Asymmetric Arylation of Cyclobutenone Ketals

Complex cyclobutanes are important motifs in both bioactive molecules and natural products, yet their enantioselective preparation has not been widely explored. In this work, we describe rhodium-catalyzed enantioselective additions of aryl and vinyl boronic acids to cyclobutenone ketals. This transformation involves enantioselective carbometalation to give cyclobutyl-rhodium intermediates, followed by β-oxygen elimination to afford enantioenriched enol ethers. Overall, this addition serves as a surrogate for Rh-catalyzed 1,4-additions to cyclobutenone.     

Enzyme-mediated sol-gel processing of alkoxysilanes

Certain proteolytic enzymes are capable of mediating the processing of tri- and tetra-alkoxysilanes to form monolithic silica via the sol-gel process, or silsesquioxane sol-gels under green, solvent-free conditions.     

Ruthenium cryptates with an unusual selectivity for nitrate

The synthesis of two new tripodal complexes [Ru(L3)](PF(6))(2) and [Ru(L4)](PF(6))(2), encapsulating a ruthenium(II) cation, has been successfully achieved and the products fully characterized, including by X-ray structural determination. The smaller cavity, built around a tris(2-aminoethyl)amido scaffold demonstrated only moderate and predictable interactions with a range of anions and no significant spectroscopic change with nitrate, chloride and bromide, although dihydrogen phosphate did result in an almost stoichiometric precipitation. The expansion of the cavity to include the more rigid 1,3,5-benzenetricarbonylamide group creates a larger cavity, which shows a decrease in the emission on the introduction of chloride, bromide, hydrogen sulfate and nitrate salts, with the (1)H NMR titrations giving a surprisingly high binding affinity for nitrate over the smaller and simpler halides.     

Asymmetric synthesis of (−)-(R)-sitagliptin

The asymmetric synthesis of (?)-(R)-sitagliptin was achieved in seven steps from commercially available starting materials using the highly diastereoselective conjugate additions of either lithium (R)-N-benzyl-N-(α-methylbenzyl)amide or lithium (R)-N-benzyl-N-(α-methyl-p-methoxybenzyl)amide to tert-butyl 4-(2′,4′,5′-trifluorophenyl)but-2-enoate to install the correct stereochemistry. Subsequent sequential acid-catalysed hydrolysis of the resultant β-amino esters, HOBt/EDC mediated coupling with the triazolopyrazine fragment, and hydrogenolysis gave (?)-(R)-sitagliptin in 43% and 42% overall yields, respectively.