Hereditarily Optimal Realizations of Consistent Metrics

One of the main problems in phylogenetics is to find good approximations of metrics by weighted trees. As an aid to solving this problem, it could be tempting to consider optimal realizations of metrics—the guiding principle being that, the (necessarily unique) optimal realization of a tree metric is the weighted tree that realizes this metric. And, although optimal realizations of arbitrary metrics are, in general, not trees, but rather weighted networks, one could still hope to obtain a phylogenetically informative representation of a given metric, maybe even more informative than the best approximating tree. However, optimal realizations are not only difficult to compute, they may also be non-unique. Here we focus on one possible way out of this dilemma: hereditarily optimal realizations. These are essentially unique, and can be described in a rather explicit way. In this paper, we recall what a hereditarily optimal realization of a metric is and how it is related to the 1-skeleton of the tight span of that metric, and we investigate under what conditions it coincides with this 1-skeleton. As a consequence, we will show that hereditarily optimal realizations for consistent metrics, a large class of phylogentically relevant metrics, can be computed in a straight-forward fashion. Received August 26, 2004     

A weight-function approach for determining watershed initial conditions for combustion waves

In many generic combustion models, one finds that a combustionwave will develop with a specific wave speed. However, thereare possible initial temperature profiles which do not evolveinto such waves, but rather die out to the ambient temperature.There can exist, in some models, a clear distinction betweenthose initial conditions that do evolve into combustion wavesand those that do not; this is sometimes referred to as thewatershed initial condition. When fuel consumption is consideredto be negligible, analytical methods can be used to obtain theexact watershed. In this paper, we consider the problem of determiningpseudo-watersheds and ascertaining the relationship betweenthese pseudo-watersheds and the exact watersheds. In the processa novel weight-function approach for infinite spatial domainsis developed.     

A generalized equation for rheology of emulsions and suspensions of deformable particles subjected to simple shear at low Reynolds number

We present analyses to provide a generalized rheological equation for suspensions and emulsions of non-Brownian particles. These multiparticle systems are subjected to a steady straining flow at low Reynolds number. We first consider the effect of a single deformable fluid particle on the ambient velocity and stress fields to constrain the rheological behavior of dilute mixtures. In the homogenization process, we introduce a first volume correction by considering a finite domain for the incompressible matrix. We then extend the solution for the rheology of concentrated system using an incremental differential method operating in a fixed and finite volume, where we account for the effective volume of particles through a crowding factor. This approach provides a self-consistent method to approximate hydrodynamic interactions between bubbles, droplets, or solid particles in concentrated systems. The resultant non-linear model predicts the relative viscosity over particle volume fractions ranging from dilute to the the random close packing in the limit of small deformation (capillary or Weissenberg numbers) for any viscosity ratio between the dispersed and continuous phases. The predictions from our model are tested against published datasets and other constitutive equations over different ranges of viscosity ratio, volume fraction, and shear rate. These comparisons show that our model, is in excellent agreement with published datasets. Moreover, comparisons with experimental data show that the model performs very well when extrapolated to high capillary numbers (C a?1). We also predict the existence of two dimensionless numbers; a critical viscosity ratio and critical capillary numbers that characterize transitions in the macroscopic rheological behavior of emulsions. Finally, we present a regime diagram in terms of the viscosity ratio and capillary number that constrains conditions where emulsions behave like Newtonian or Non-Newtonian fluids.     

Level 17 Ramanujan–Sato series

The Ramanujan Journal - Two level 17 modular functions $$\begin{aligned} r = q^2 \prod _{n=1}^{\infty } (1-q^{n})^{\left( \frac{n}{17} \right) },\qquad s = q^{2} \prod _{n=1}^{\infty } \frac{(1 -...     

Affine Maps That Induce Polyhedral Complex Isomorphisms

In this paper we show that an affine bijection f : T ₁ → T ₂ between two polyhedral complexes T ₁ ,T ₂ , both of which consist of a union of faces of two convex polyhedra P ₁ and P ₂ , necessarily respects the cell-complex structure of T ₁ and T ₂ inherited from P ₁ and P ₂ , respectively, provided f extends to an affine map from P ₁ into P ₂ . In addition, we present an application of this result within the area of T-theory to obtain a far-reaching generalization of previous results regarding the equivalence of two distinct constructions of the phylogenetic tree associated to ``perfect' (that is, treelike) distance data. Received September 30, 1999, and in revised form February 25, 2000. Online publication May 15, 2000.     

On semianalytic subsets of rigid analytic varieties

We show some topological properties of semianalytic subsets of rigid analytic varieties: curve selection lemma, the closure of a semianalytic subsetS is semianalytic, for every quasi-compact morphismf. As an application we show that a morphismf: X Y of rigid analytic varieties is open at a pointx X if and only if SpecO _X,x SpecO _Y,f(x) is surjective.     

All-solid-state continuous-wave frequency-doubled Nd:YAG-BiBO laser with 2.8-W output power at 473 nm

We report on a diode-pumped Nd:YAG laser with 4.6 W of linear polarized continuous-wave (cw) output power on the 4F3/2 --> 4I9/2 transitions at 946 nm. Three different crystals, cut for critical type I phase matching at room temperature, are used for the intracavity frequency doubling of the laser: 10-mm-long LiBaO5 (LBO), an 8-mm-long beta-BaB2O4 (BBO), and a 10.4-mm-long BiB3O6 (BiBO) grown by FEE GmbH. Up to 2.8 W of cw output power in the blue spectral range at 473 nm has been achieved with the BiBO crystal (2.1 W with BBO and 1.5 W with LBO).