Factors determining the performance of triple quadrupole, quadrupole ion trap and sector field mass spectrometers in electrospray ionization tandem mass spectrometry of oligonucleotides. 1. Comparison of performance characteristics

The performance of triple-stage quadrupole (TSQ), quadrupole ion trap (QIT), and double focusing sector field (DFSF) mass spectrometers for the generation of fragment ions to obtain sequence information about oligonucleotides was compared. Upon electrospray ionization (ESI), the charge-state distribution of candidate precursor ions not only varied significantly with the type of mass spectrometer, but also with the size and sequence of the investigated oligonucleotides. While concentration limits of detection for an octanucleotide were in the 100 pmol/L range on the QIT and in the 5-10 nmol/L range on the TSQ and DFSF instruments, those of a 24-mer were in the 2-13 nmol/L range on all three instruments. Reproducibility of mass determination, an important prerequisite for reliable identification of fragment ions, was highest on the TSQ with 0.0037% relative standard deviation over three days. Finally, the tandem mass spectra of a dimethoxytritylated pentanucleotide recorded on the three instruments were compared. Relatively simple spectra dominated by complete series of fragment ions of the (a-B) and w type were obtained on the QIT. Complete series of (a-B) and w ions were also observed on the TSQ. However, additional fragments belonging to the b, c, d, x and z series were found in the spectrum. In the spectrum recorded after in-source fragmentation in the DFSF, only fragments corresponding to the loss of a nucleobase and a complete series of w ions were observed. All three mass spectrometers were suitable for the generation of fragment ions, from which the complete nucleotide sequence of the pentanucleotide could be deduced.     

Use of γ-γ Coincidence Spectrometry in the Geochemical Study of Diamictites from South Africa

We used - coincidence spectrometry to investigate the possible presence of a meteoritical component in 27 samples of South African diamictites. Recently, several studies have suggested that some tillites/diamictites may represent impact breccias, but a petrographical study by our group found no evidence for the presence of impact-characteristic shocked minerals. The siderophile elements, such as Cr, Co, Ni, and, especially, the platinum group elements, have high abundances in meteorites, but low abundances in terrestrial crustal rocks. The Ir content of the diamictites was measured with the new iridium coincidence spectrometer (ICS) at the University of Vienna, with detection limits of around 0.02 ppb. No enrichments in the contents of Ir and other siderophile elements compared to average crustal concentrations were found; thus, no unequivocal evidence for an impact origin of these diamictites of the South African Dwyka Group can be documented.     

Loss of epithelial polarity is accompanied by differential association of proteins with intracellular membranes

Cellular membranes play an important role in the formation and maintenance of epithelial polarity, which is lost early during carcinogenesis. We set out to identify membrane proteins which are altered during loss of cell polarity in mammary epithelium. As a model system we used murine mammary epithelial cells expressing the conditional oncoprotein c-JunER, which induces a reversible loss of polarity upon beta-estradiol-driven activation [1]. When grown either in the absence or presence of hormone, these cells exhibit a polarized or unpolarized phenotype, respectively. Different membrane fractions of polarized or unpolarized cells were analyzed by two-dimensional electrophoresis (2-DE) and differentially expressed membrane proteins were identified. To distinguish between transmembrane orientation and peripheral attachment of these proteins, were performed extractions with carbonate at high pH or with Triton X-114. In addition, cytosolic proteins of both states were analyzed to investigate their differential association with distinct membrane fractions. We found ten protein spots preferentially or exclusively in polarized cells and 17 other proteins as being upregulated during loss of polarity. Some of the peripheral membrane proteins were identified by microsequencing. The resident Golgi protein nucleobindin and fructose-bisphosphate aldolase were preferentially associated with membranes of polarized cells, whereas alphaB crystallin was detected exclusively and in high amounts in unpolarized cells.     

PHOTOCHEMISTRY OF FLAVINS—I. CONVENTIONAL AND LASER FLASH PHOTOLYSIS STUDY OF ALLOXAZINE

Abstract— The photobleaching of alloxazine in buffered aqueous solution has been studied by means of flash photolysis using conventional and laser excitation sources. Several transient species have been characterized. The alloxazine triplet state (Λ_max 420 nm and 550 nm, times; = 9 μs) was identified with the aid of low-temperature comparison experiments in ethanol. Transient absorption with Λ_max 440 nm, which appears after decay of the triplet state, and whose second-order decay is pH-dependent, is postulated to be due to the semiquinone radical (AH₂*) and a radical derived from alloxazine by addition of water and loss of a hydrogen atom (HAOH*), which are in equilibrium with their conjugate cation radicals. The results of experiments in the presence of oxygen indicate that these species are not primarily formed from the triplet state. The enhanced second-order decay of the flavin radicals in oxygen-containing solutions is interpreted in terms of their reaction with the peroxy radicals. The proposed mechanisms account for the production of hydroxylated alloxazines.     

Die Bestimmung von Derivaten der Kohlensäure über eine saure Verseifung

Zusammenfassung Durch Hydrolyse in siedender, hochkonzentrierter Phosphorsäure läßt sich anscheinend aus allen Kohlensäurederivaten quantitativ Kohlendioxid abspalten. Dieses wird nach Reinigung und Trocknung gravimetrisch bestimmt. Folgende Verbindungen wurden analysiert: lineare und cyklische Harnstoffe, Thioharnstoffe, Urethane, Carbamate, Kohlensäureester, Phenylisocyanat, Melamin, Guanidin, Cyanursäure und Dicyandiamid. Die Anwendung verschiedener Phosphorsäurekonzentrationen erlaubt auch selektive Bestimmungen.

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The determination of derivatives of carbonic acid via an acidic hydrolysis

Summary Hydrolysis in boiling highly concentrated phosphoric acid seemingly results in the quantitative splitting off of carbon dioxide from all derivatives of carbonic acid. The latter is determined gravimetrically after purification and drying. The following compounds were analyzed: linear and cyclic ureas, thioureas, urethanes, carbamates, esters of carbonic acid, phenylisocyanate, melamine, guanidine, cyanuric acid, dicyandiamide. The use of various concentrations of phosphoric acid permits selective determinations.

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Herrn Prof. Dr.B. Timm zum 60. Geburtstag gewidmet.     

Comparative study of capillary zone electrophoresis and high-performance liquid chromatography in the analysis of oligonucleotides and DNA.

Capillary zone electrophoresis and high-performance liquid chromatography were compared with regard to the separation of oligonucleotides and double-stranded DNA. Both anion-exchange and reversed-phase high-performance liquid chromatography on non-porous particles are considered to be superior to capillary electrophoresis in terms of speed and selectivity in the analysis of oligonucleotides up to 30 bases in length. Moreover, reversed-phase chromatography allows the simultaneous purification of detritylated oligonucleotides with recoveries > 90%. Compared with anion-exchange chromatography, there is no need for a subsequent desaltation step because the volatile buffer system can be readily evaporated. With regard to dsDNA, however, the resolving power of capillary electrophoresis cannot be matched by anion-exchange chromatography at present. Moreover, the combined use of hydroxyethylcellulose and ethidium bromide not only yielded a separation efficiency equal to that achieved by means of gel-filled capillaries but also avoids some of their limitations such as the destruction of the gel matrix at high current densities and the bias involved in electrokinetic injection.     

Fluorescence from the second excited singlet of aromatic thioketones in solution

The spectral characteristics and the quantum yield of the fluorescence from the second excited singlet state S₂ of the aromatic thioketone molecules xanthione (XS) and thioxanthione (TXS) have been determined in solution at room temperature and 77 K. In 3-methylpentane, the measured quantum yields are φ_f (295 K) = 5.1 × 10^?3 and φ_f(77 K) = 1.0 × 10^?2 for XS, and φ_f (295 K) = 1.5 × 10^?3 and φ_f (77 K) = 2.5 × 10^?3 for TXS. Using the Strickler-Berg expression for the radiative lifetime, the decay rate of S₂ is derived. It is concluded that internal conversion S₂ ? S₁ is the dominating deactivation channel of S₂ with k^{77 K}_nr(S₂ ? S₁) = 1.0 × 10¹⁰ s^?1 for XS and k^{77 K}_nr (S₂→S₁) = 2.2 × 10¹⁰ s^?1 for TXS. Between 295 and 77 K, φ_f increases by a factor of about 2 following an Arrhenius type expression. This temperature dependence of φ_f is considered to be intramolecular in nature and is attributed to a temperature sensitive rate constant k_nr(S₂?S₁) with an activation energy of 190 ± 20 cm^?1 and a frequency factor k′_nr = 3 × 10¹⁰ s^?1 for the XS molecule in 3-methylpentane.     

Time-resolved spectra of excited-state absorption in Er3+ doped YAlO3

A pump- and probe-beam technique is used for measuring time-resolved excited-state absorption (ESA) and stimulated-emission (SE) spectra of Er³⁺ doped YAlO₃. The Er^{3+ 4} I _15/2 ⁴ F _7/2 transition of the sample is excited at 488 nm by an excimer laser pumped dye laser. The ESA and SE of broadband xenon flashlamp light is monitored between 300 and 860 nm by an optical multichannel analyzer (OMA). The analysis of the experimental results provides information on the effective cross sections _ESA and _SE originating from several levels and on the populations of these levels. To our knowledge this represents the first detailed investigation of time-resolved ESA and SE over a broad spectral range in rare-earth doped materials.