An alternative preparation of the 2-dimethylaminomethylene-1,3-bis(dimethylimmonio)propane salt from phosphonoacetic acids and some applications in heterocyclic synthesis

An alternative preparation of a 2-iminovinamidinium salt from phosphonoacetic acids is described along with its application to the synthesis of 5-formylpyrimidines and masked 4-formylpyrazoles.     

Self consistent field molecular orbital calculation for pyrrole

The electronic structure and spectrum of pyrrole have been studied using the semiempirical LCAO SCF MO method. With configuration interaction included, low excited singlet states are calculated to occur at 5.98 ev, 6,74 ev, 7,33 ev, and 8,20 ev, in good agreement with the experimental values of about 5.88 ev, 6.77 ev, and 7,21 ev. The dipole moment of the molecule is calculated to 1.84 D, to be compared with the experimental value 1.80 D. Tables of coreattraction integrals for combinations of carbon and nitrogen atoms are presented.

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Zusammenfassung Elektronenstruktur und -spektrum des Pyrrols wurden nach, der halbempirischen LCAO SCF MO-Methode untersucht. Unter Einschluß der Konfigurationenwechselwirkung wurden niedrigliegende angeregte Singulettniveaus bei 5,98, 6,74, 7,33 und 8,20 eV (über dem Grundzustand) errechnet, in guter Übereinstimmung mit den experimentellen Werten von etwa 5,88, 6,77 und 7,21 eV. Das Dipolmoment des Moleküls ergibt sich zu 1,84 D, bei einem experimentellen Wert von 1,80 D.Tabellen von (sphärischen) Rumpf-Elektron-Integralen für alle vier Kombinationen von C und N werden angegeben.

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Résumé La structure et le spectre électroniques du pyrrole ont été étudiés à l'aide de la méthode sémiempirique LCAO SCF MO. L'interaction de configurations inclue, le calcul donne des états excités à 5,98, 6,74, 7,33 et 8,20 eV (au-dessus de l'état fondamental), en bon accord avec les valeurs expérimentales de 5,88, 6,77 et 7,21 eV. Le moment dipolaire calculé de la molécule est 1,84 D, l'expérience donnant 1,80 D. Des tables d'intégrales d'attraction entre un coeur sphérique et un électron d'un autre atome sont données pour les quatre combinaisons d'atomes C et N.

     

Approaches to the description and prediction of the binding affinity of small-molecule ligands to macromolecular receptors

The influence of a xenobiotic compound on an organism is usually summarized by the expression biological activity. If a controlled, therapeutically relevant, and regulatory action is observed the compound has potential as a drug, otherwise its toxicity on the biological system is of interest. However, what do we understand by the biological activity? In principle, the overall effect on an organism has to be considered. However, because of the complexity of the interrelated processes involved, as a simplification primarily the "main action" on the organism is taken into consideration. On the molecular level, biological activity corresponds to the binding of a (low-molecular weight) compound to a macromolecular receptor, usually a protein. Enzymatic reactions or signal-transduction cascades are thereby influenced with respect to their function for the organism. We regard this binding as a process under equilibrium conditions; thus, binding can be described as an association or dissociation process. Accordingly, biological activity is expressed as the affinity of both partners for each other, as a thermodynamic equilibrium quantity. How well do we understand these terms and how well are they theoretically predictable today? The holy grail of rational drug design is the prediction of the biological activity of a compound. The processes involving ligand binding are extremely complicated, both ligand and protein are flexible molecules, and the energy inventory between the bound and unbound states must be considered in aqueous solution. How sophisticated and reliable are our experimental approaches to obtaining the necessary insight? The present review summarizes our current understanding of the binding affinity of a small-molecule ligand to a protein. Both theoretical and empirical approaches for predicting binding affinity, starting from the three-dimensional structure of a protein-ligand complex, will be described and compared. Experimental methods, primarily microcalorimetry, will be discussed. As a perspective, our own knowledge-based approach towards affinity prediction and experimental data on factorizing binding contributions to protein-ligand binding will be presented.     

Reduction Potentials of Tetraaminecopper(II/I) Couples

The difference in steric strain between the oxidized and the reduced forms of tetraaminecopper complexes is correlated with the corresponding reduction potentials. The experimentally determined data considered range from ?0.54 to ?0.04 V (vs. NHE) in aqueous solution and from ?0.35 to ?0.08 V (vs. NHE) in MeCN. The observed and/or computed geometries of the tetraaminecopper(II) complexes are distorted octahedral or square-pyramidal (4 + 2 or 4+1) with (distorted) square-planar CuN₄ chromophores (Cu^II? N = 1.99–2.06 Å; Cu? O ≈ 2.5 Å; Cu? O ≈ 2.3 Å), those of the tetraaminecopper(I) complexes are (distorted) tetrahedral (four-coordinate; Cu^I? N = 2.12–2.26 Å; tetrahedral twist angle ?? = 30–90°). The reduction potentials of Cu^II/I couples with primary-amine ligands and those with macrocyclic secondary-amine ligands were correlated separately with the corresponding strain energies, leading to slopes of 70 and 61 kJ mol^?1 V^?1, with correlation coefficients of 0.89 and 0.91, respectively. The approximations of the model (entropy, solvation, electronic factors) and the limits of applicability are discussed in detail and in relation to other approaches to compute reduction potentials of transition-metal compounds.     

Efficient loading of sulfonamide safety-catch linkers by Fmoc amino acid fluorides

[reaction: see text] Fmoc-protected amino acid fluorides were found to be excellent reagents for the acylation of sulfonamide safety-catch linkers (SCL) suitable for the subsequent preparation of peptide C-terminal thioesters. High loadings were obtained on different types of resins with low levels of epimerization.     

AES investigations of plasma sprayed Al2O3 coatings on Ni

Summary The system of plasma sprayed Al₂O₃ on Ni substrates is investigated by means of AES/depth profiling. The influence of two process parameters — preoxidation procedure and spraying temperature — is examined. Rupture between substrate and ceramic layer occurs between a residual — or, in the case of excessive preoxidation, a superfluous — NiO layer on Ni, the thickness of the former depending on preoxidation conditions and the Al₂O₃ layer, the back side of which being partially covered with NiO. The thickness of this NiO layer increases up to about 1 m with the thickness of the initial NiO layer on the substrate, until this layer is about 1.3 m thick, and remains constant thereafter. The same dependence is observed for the width (0.1–1 m range) of the mixed oxide interface between the sprayed Al₂O₃ layer and the NiO layer below. These results represent the chemical contribution to adherence. Contrary to excessive preoxidation, an increase of the spraying temperature from 300°C to 500°C effects broader interfaces.This poster was awarded the First Prize in Poster Section C by the Deutscher Arbeitskreis für Spektroskopie (DASp)     

The infrared spectrum of Au-.CO2

The Au-.CO2 ion-molecule complex has been studied by gas phase infrared photodissociation spectroscopy. Several sharp transitions can be identified as combination bands involving the asymmetric stretch vibrational mode of the CO2 ligand. Their frequencies are redshifted by several hundred cm(-1) from the frequencies of free CO2. We discuss our findings in the framework of ab initio and density-functional theory calculations, using anharmonic corrections to predict vibrational transition energies. The infrared spectrum is consistent with the formation of an aurylcarboxylate anion with a strongly bent CO2 subunit.     

A CNDO-MO calculation of VCl4

The electronic structure of the tetrahedral molecule VCL₄ is investigated within the CNDO-MO approximations. The metal and ligand valence orbitals, 3d, 4s, 4p; and 3s, 3p; respectively, have been systematically varied in an attempt to minimize the total energy; “optimum” V 4s(χ₄ = 1.10) and 4p(d ³ p ²) orbitals have been established, but V 3d(d ⁿ ) and Cl(-δ) valence orbitals are only seen to favor lower energy for expanded orbitals. Since determining the one-electron molecular orbital level which is occupied by the vanadium lone electron is a major aspect of this investigation, all calculations have been performed in triplicate: calculations assuming the unpaired electron occupies the 3a ₁, 2 _e and 4t ₂ molecular orbital (ground state electronic configurations² A ₁,² E, and² T ₂, respectively). The Hartree-Fock equations have been solved by Roothaan's SCF method for open shells, but off-diagonal multipliers between filled and partly filled molecular orbitals of the same symmetry have been neglected. As a qualitative estimate of the error introduced by this simplification, the pertinent overlap integrals between the eigenfunctions from calculations for the three possible configurations,² A ₁,² E, and² T ₂, are investigated as functions of the component 3d(d ⁿ ) and Cl(-δ) valence orbitals. The overlap integrals from the relevant² A ₁ and² T ₂ calculations are reasonably small, but the neglect of off-diagonal multipliers in calculations on the² E state is found to be a poor approximation. An ordering of the non-filled molecular orbitals in VCl₄ of 4t ₂ < 3a ₁ < 2e < 5t ₂ seems most consistent with the numerous calculations. This suggested ground state electronic configuration of² T ₂ introduces new aspects to the consideration of a (dynamic) Jahn-Teller effect in VCl₄. Experimental data pertinent to the electronic structure of VCl₄ has been briefly summarized, but unfortunately it is inadequate to confirm or deny the present calculations.     

Pyrimidine acyclo-C-nucleosides by ring transformations of 2-formyl-L-arabinal

The protected 2-formyl-L-arabinal 2 reacted with thiourea and cyanamide in the presence of sodium hydride to afford via ring transformations the 5-[1R,2S-1,2- bis(benzyloxy)-3-hydroxypropyl]-1,2-dihydropyrimidines 3 and 4, respectively. Similarly, treatment of 2 with 3-amino-2H-1,2,4-triazole yielded 6-[1R,2S-1,2- bis(benzyloxy)-3-hydroxypropyl][1,2,4]-triazolo[1,5-a]pyrimidine (5).