Distributed computing and NMR constraint-based high-resolution structure determination: applied for bioactive Peptide endothelin-1 to determine C-terminal folding

Distributed computing has been implemented to the solution structure determination of endothelin-1 to evaluate efficiency of the method for NMR constraint-based structure calculations. A key target of the investigation was determination of the C-terminal folding of the peptide, which had been dispersed in previous studies of NMR, despite its pharmacological significances. With use of tens of thousands of random initial structures to explore the conformational space comprehensively, we determined high-resolution structures with good convergences of C-terminal as well as previously defined N-terminal structures. The previous studies had missed the C-terminal convergence because of initial structure dependencies trapped in localized folding of the N-terminal region, which are strongly constricted by two disulfide bonds.     

A simple and simultaneous determination of acyclovir and ganciclovir in human plasma by high-performance liquid chromatography

A simple high-performance liquid chromatographic method was developed for the simultaneous determination of the therapeutic levels of acyclovir and ganciclovir in human plasma. After precipitation of plasma proteins with 6% perchloric acid, acyclovir and ganciclovir were simultaneously determined by reversed-phase chromatography with spectophotometric detection at 254 nm. The peak heights for acyclovir and ganciclovir were linearly related to their concentrations ranging from 0.063 to 2.080 micro g/mL. The recovery was 100.48-102.84% for acyclovir and 99.26-103.07% for ganciclovir. The intra- and inter-day relative standard deviation values were in the range 0.186-8.703% for acyclovir and 0.137-6.424% for ganciclovir. The detection limits for both compounds were 0.01 micro g/mL determined as the signal-to-noise ratio of 3. The present method is applicable to therapeutic monitoring during antiviral medication.     

The photochemical synthesis of 4-acyl-1,2-dimethyl-3H-phenothiazin-3-ones

4-Acyl-1,2-dimethyl-3H-phenothiazin-3-ones were prepared by the photochemical reaction of 1,2-dimethyl-3H-phenothiazin-3-one with aldehydes. The structures of the newly prepared compounds were determined by elemental analysis, spectroscopic methods (ir, nmr and ms) and comparison with a sample prepared by an alternate route.     

Copper-catalyzed allylation of carbonyl derivatives using allyl(2-pyridyl)silanes

[reaction: see text] We have developed an efficient copper-catalyzed allylation of carbonyl derivatives using allyl(2-pyridyl)silanes, in which the strong directing effect of the 2-pyridyl group was observed. A useful synthesis and allylation of substituted allyl(2-pyridyl)silanes is also described.     

Self-ordering process of phenanthrene polyesters observed by the simultaneous DSC-XRD method

Phase transition behavior of polyesters derived from 2,7-phenanthrene dicarbonic acid diethylester and alkanediols with even methylene carbon number was investigated by the simultaneous DSC-XRD method. The smectic A phase was observed on cooling from the molten state. The transition entropy from the isotropic state to the smectic A phase was about 9.0 J mol^-1 K^-1, which depended on the methylene carbon number. The linear expansion coefficients, based on the (001) spacing of the crystalline phase at room temperature, were 1.3·10^-4 K^-1 (crystalline phase), 5.7·10^-4 K^-1 (crystallization region), 1.7·10^-3 K^-1 (smectic A phase) during cooling, and 1.5·10^-4 K^-1 (crystalline phase), and 1.0·10^-3K^-1(melting region) on heating. This revised version was published online in July 2006 with corrections to the Cover Date.     

Enantioselective reduction of ketones with optically active 2,2′-diamino-6,6′-dimethylbiphenyl-lithium aluminum hydride complex

Enantioselective reductions of prociral ketones with chiral hydride reagent prepared from optically active 2,2′-diamino-6,6′-dimethylbiphenyl and lithium aluminum hydride were accomplished in O.Y. more than 50%.     

Effects of type of adsorption isotherms on parallel diffusion of sulfonated dyes into porous cellulose membrane

Transport phenomenon of three sulfonated azo dyes, C.I. Acid Red 88, C.I. Direct Yellow 12, and C.I. Direct Blue 15 into water-swollen cellulose membranes has been analyzed on the basis of parallel transport theory by surface and pore diffusion. Langmuir equation was applied into the mass balance equation to estimate dye concentration in the pores. The results were compared with the results obtained by applying Freundlich equation in our previous papers. The surface diffusivity (D _s) and the pore diffusivity (D _p) for the parallel diffusion model obtained by applying Langmuir equation agreed with those obtained by applying Freudlich equation. The theoretical concentration profiles for parallel diffusion calculated usingD _s andD _p coincided accurately with the experimental data when we applied either Langmuir or Freundlich equations.     

Poly(dimethylsilylene-co-diphenylsilylene)

In this work several polyorganosilylenes were synthesized including homo-and copolymers containing SiMe₂ and SiPh₂ units. A Wurtz-type coupling reaction of the respective dichlorodiorganosilanes with sodium metal, varying the Ph₂SiCl₂/Me₂SiCl₂ ratio was the chosen synthesis method. Products with different characteristics for solubility, structure (cyclic or linear), composition, and molecular weight distribution could be obtained depending on the comonomer ratios employed. The polysilane derivatives were characterized by infrared spectroscopy (IR), proton nuclear magnetic resonance (¹H-NMR), and gel permeation chromatography (GPC). Valuable information related to the comonomers' reactivities was obtained, such as molecular weight distribution, composition, and relationships between yields of soluble, insoluble, and cyclic materials of each polycondensation reaction. © 1992 John Wiley & Sons, Inc.     

Porphyrin acids

The structural change from the porphyrin free base to monoacid and diacid by successive protonation has been studied by the IR, visible and NMR spectroscopy. The results have indicated that the cation and anion of the porphyrin diacid are strongly associated through H-bonding. The far IR spectra show especially marked differences in the free base, monoacid, and diacid due to the changes of the inner core of the porphyrin ring.