What orchestrates the self-assembly of glycine molecules on Cu(100)?

The structures of two competing phases and their interrelationship in the self-organization of glycine molecules on a Cu(100) surface were clarified. Despite their similar structural energies predicted using first-principles calculation, completely different mechanisms were found to stabilize the two phases. The balance and coordination of the two mechanisms that induce a variety of self-assembled structures in this attractive system were revealed. Furthermore, the importance of the microscopic arrangement of the molecules in designing the macroscopic electronic structures was directly demonstrated.     

Hole-burning spectra of phenol-Arn (n = 1, 2) clusters: resolution of the isomer issue

The hole-burning (HB) spectra of phenol-Arn (PhOH-Arn) clusters with n = 1 and 2 have been measured in a molecular beam to clarify the possible existence of isomers. Two species were identified to give rise to signals in the S1-S0 spectrum recorded for the n = 1 cluster; however, one of the species was found to originate from dissociation of an n = 2 cluster. Similarly, three species were observed in the spectrum of the n = 2 cluster, and two of them were assigned to n = 3 and larger clusters. The spectral contamination from larger size clusters was quantitatively explained by the dissociation after photoexcitation. The analysis of the spectra demonstrates that only a single isomer exists in the molecular beam for both the n = 1 and the n = 2 clusters. In addition to two previously detected intermolecular modes, a third low-frequency mode, assigned to an intermolecular bending vibration, is observed for the first time in the HB spectrum of the n = 2 cluster. The assignments of the intermolecular vibrations were confirmed by ab initio MO calculations. The observation of the third intermolecular vibration suggests that the geometry of the n = 2 cluster has Cs or lower symmetry.     

Reaction paths of the water-assisted solvolysis of N,N-dimethylformamide

Density functional theory calculations were conducted on the title reactions with explicit inclusion of a variety of water molecules, H-CO-NMe2+MeOH+(H2O)n-->H-CO-OMe+HNMe2+(H2O)n. Geometries of transition states, reactant-like complexes and product-like ones were determined by the use of RB3LYP/6-31G(d) SCRF=dipole. Concerted paths were examined with n=0-3. Their Gibbs activation energies are larger than the experimental value. Stepwise paths were also investigated with n=2-4. The n=4 model has the energy close to the experimental value. However, when the catalytic water molecules were added to the n=4 one, the stepwise path was switched to the concerted one. A systematic comparison of the concerted path with n=2+1, 2+2, 2+3, 2+4, 2+5, 2+4+4, and 2+5+5 models was made, and the water-dimer based reaction path was found to be most favorable. The contrast between the concerted path of the amide solvolysis (and hydrolysis) and the stepwise one of the ester hydrolysis was discussed in terms of the frontier-orbital theory.     

First-principles molecular dynamics study on aqueous sulfuric acid solutions

The properties of aqueous sulfuric acid have been studied employing density functional theory-based molecular dynamics simulations in conjunction with norm-conserving pseudopotentials. The simulations were carried out for two different concentrations whose molar concentrations were fixed at 0.84 and 10.2 mol/l. The structural features of aqueous sulfuric acid solutions show a strong dependency on the concentration. The Gr?tthuss-type proton transfer mechanism is not effectively operative at the higher concentration because of the broken hydrogen bond network of water induced by ions generated by the dissociation of sulfuric acid. In addition, to evaluate electrical properties, we carried out a simulation that takes an electric field into account. Results are compared with those of the simulation undertaken with no external electric field.     

Poly(ethylene glycol)-conjugated phospholipids in aqueous micellar solutions: hydration, static structure, and interparticle interactions

By means of dielectric relaxation spectroscopy (DRS) and small-angle X-ray scattering (SAXS), we have investigated hydration behavior, solvent dynamics, and static structures of aqueous solutions of poly(ethylene glycol)-conjugated distearoyl phosphatidylethanolamine (DSPE-PEG) (molecular weight of PEG: M(PEG)= 2000, 5000, and 12,000 Da). A quantitative analysis of the bulk-water relaxation amplitude revealed the effective hydration number of a DSPE-PEG molecule per ethylene oxide monomer unit to be approximately 5.0-5.5, virtually independent of M(PEG). The overall hydration number of a DSPE-PEG molecule is ca. 20% higher than that of the corresponding normal PEG (without DSPE). This is attributed to both hydration of a charged head group of phosphoric acid in DSPE and a packing effect of PEG chains into micellar structures. The pair-distance distribution functions, p(r), extracted from the GIFT analysis of SAXS intensities show that the DSPE-PEGs form spherical-like micelles in water having the maximum diameter of approximately 16, 22, and 31 nm, respectively, for M(PEG) = 2000, 5000, and 12,000 Da and nearly identical aggregation numbers of 72 (+/-10%). The DSPE-PEG micelles behave as charged colloids whose interparticle interaction potential can be approximated by the screened Coulomb potential model. The extracted pair correlation function g(r) demonstrates that both electrostatic repulsion induced by the charged head group and excluded volume effects of the fully hydrated PEG layer contribute to repulsive interactions among the PEG-lipid micelles. This should be a key factor for the function of PEG lipids as a stabilizer of liposomes.     

Dipole-LUMO/dipolarophile-HOMO controlled asymmetric cycloadditions of carbonyl ylides catalyzed by chiral Lewis acids

We have found the first successful example of reverse-electron-demand dipole-LUMO/dipolarophile-HOMO controlled cycloaddition reactions between carbonyl ylides, which were generated from o-methoxycarbonyl-alpha-diazoacetophenone and their acyl derivatives as precursors, and vinyl ether derivatives with high levels of asymmetric induction (97-77% ee) using chiral 2,6-(oxazolinyl)pyridine-Eu(III) or binaphthyldiimine-Ni(II) complexes as chiral Lewis acid catalysts.     

Electron transfer promoted regioselective ring-opening reaction of cyclopropyl silyl ethers

Oxidative ring-opening reactions of cyclopropyl silyl ethers incorporated into bicyclo[m.1.0]alkane framework were investigated. The results show that the regioselectivities for ring-opening of intermediate radical cations, formed by single electron transfer, are governed by the nature of the nucleophile as well as oxidizing species.     

Scanning tunneling microscopy/spectroscopy on self-assembly of a glycine/Cu(111) nanocavity array

The step-by-step analysis of a hierarchical self-assembly revealed the incorporation of nanocavity blocks in a metastable orientation to stabilize the organized array. The confinement of 2D electrons by a quantum corral was verified. Furthermore, manipulation of an isolated C(60) molecule was realized using nanocavities of ～1.3 nm diameter as a template.     

Crystal structure of thermosensitive gel spheres of poly(N-isopropylacrylamide) in the deionized aqueous suspension as studied by the static light-scattering measurements

Static light-scattering measurements of deionized suspensions of the thermosensitive gels of poly(N-isopropylacrylamide) with various degrees of cross-linking and sizes were made at 20 and 40 °C. Sharp scattering peaks are observed in the scattering curve, and they were attributed to the face-centered cubic (fcc) and/or body-centered cubic lattices (bcc) in the distribution of gel spheres. The fcc and bcc crystal structures formed in the stable and unstable conditions, respectively, i.e., the former formed more favorably at high sphere concentrations and/or low temperatures. The closest intersphere distances were much longer than the hydrodynamic diameters of the gel spheres especially at low sphere concentrations. These experimental results emphasize the important role of the extended electrical double layers in the crystallization of gel spheres, though the contribution of the double layers in gel systems is weak compared with that in the typical colloidal spheres.