Global analysis of single nucleotide polymorphisms in the exons of human deoxyribonuclease I-like 1 and 2 genes

Several SNPs in the deoxyribonuclease I-like 1 (DNase 1L1) and DNase 1L2 were investigated. In the present study, the genotype distributions of three synonymous SNPs (V59V, rs1050095; P67P, rs1130929; A277A, rs17849495) in the DNase 1L1 gene and four non-synonymous SNPs, V122I (rs34952165), Q170H (rs6643670), and D227A (rs5987256) in the DNase 1L1 gene, as well as D197A (rs62621282) in the DNase 1L2 gene were investigated in 13 populations. In all the populations, no variation was found in four SNPs (V59V, Q170H, D227A, and A277A) in DNASE1L1 or in D197A in DNASE1L2. As for V122I, only the German population showed a low degree of polymorphism. The SNP V122I in DNASE1L1 was monoallelic for the G-allele in all of the Asian and African populations examined, with no polymorphism being evident. Since the A-allele in SNP V122I was distributed in only the Caucasian populations, not in the other ethnic groups, it was confirmed that the A-allele in SNP V122I was Caucasian-specific. On the other hand, only P67P in DNASE1L1 was polymorphic among three synonymous SNPs. The effect of nucleotide substitution corresponding to polymorphic SNP P67P on DNase 1L1 activity was examined: the corresponding nucleotide substitution in polymorphic SNP P67P has little effect on the DNase activity.     

Isolation, synthesis, and neurite outgrowth-promoting activity of illicinin A from the flowers of Illicium anisatum

Two new prenylated C₆-C₃ compounds, illicinin A (1) and (4S)-illicinone I (2), were isolated from the flowers of Illicium anisatum. The structures of the new compounds were elucidated by spectroscopic methods. The absolute structure of (4S)-illicinone I was determined by comparing its CD spectrum and specific rotation with those of (4S)-illicinone A (4). Illicinin A (1) and 4-allyl-2,6-dimethoxy-3-(3-methylbut-2-enyl)phenol (3) were found to exhibit neurite outgrowth-promoting activity at concentrations ranging from 0.1 to 10 μM in primary cultured rat cortical neurons. Illicinin A and its derivatives were synthesized for structure-activity relationship studies by employing sequential Stille reactions to introduce a prenyl and an allyl group to the benzene ring, thereby indicating that an allylphenyl moiety in the molecule of 1 is essential for its neurotrophic properties.     

Instrumental neutron activation analysis of hafnium in zirconium metal using internal standardization

Instrumental neutron activation analysis with the internal standard correction was applied to determination Hf in high purity Zr metal. Zirconium, which was a matrix element, was used as an internal standard to compensate for inhomogeneity of the neutron flux through an irradiation capsule and to improve the gamma ray measurement uncertainty. It was found that the linearity of the calibration curves of Hf was improved with using an internal standard. The analytical result of Hf in Zr metal was in good agreement with that obtained by ICP-SFMS. The relative expanded uncertainty (k = 2) was 2.1%, and it was comparable to that of ICP-SFMS.     

Generation of anti-trypanosomal agents through concise synthesis and structural diversification of sesquiterpene analogues

To access high-quality small-molecule libraries to screen lead candidates for neglected diseases exemplified by human African trypanosomiasis, we sought to develop a synthetic process that would produce collections of cyclic scaffolds relevant to an assortment of natural products exhibiting desirable biological activities. By extracting the common structural features among several sesquiterpenes, including artemisinin, anthecularin, and transtaganolides, we designed six types of scaffolds with systematic structural variations consisting of three types of stereochemical relationships on the sp(3) ring-junctions and two distinct arrays of tricyclic frameworks. A modular and stereodivergent assembly of dienynes exploiting a versatile manifold produced a series of cyclization precursors. Divergent cyclizations of the dienynes employing tandem ring-closing metathesis reactions overrode variant reactivities of the cyclization precursors, leading to the six canonical sets of the tricyclic scaffolds incorporating a diene group. Screenings of trypanosomal activities of the canonical sets, as well as regio- and stereoisomers of the tricyclic dienes, allowed generation of several anti-trypanosomal agents defining the three-dimensional shape of the pharmacophore. The candidate tricyclic dienes were selected by primary screenings and further subjected to installation of a peroxide bridge, which generated artemisinin analogues that exhibited potent in vitro anti-trypanosomal activities comparable or even superior to those of artemisinin and the approved drugs, suramin and eflornithine.     

Synthesis of new Galβ1→4Fuc segments useful for biological investigations

Useful segments (1, 2) for chemical probes embedded in a Galβ1→4Fuc unit were designed and prepared for characterizing sugar-binding proteins in Caenorhabditis elegans. Segment 1 with an amino group terminus was used as a recognition unit in affinity chromatography. It was revealed that some proteins (annexins and galectins) in C. elegans have an affinity for Galβ1→4Fuc.     

Chemical studies on an endemic Philippine plant: sulfated glucoside and seco-A-ring triterpenoids from Dillenia philippinensis

The leaves of the endemic Philippine plant, Dillenia philippinensis yielded 11 compounds including one new sulfated glucoside and a new seco-A-ring oleanane-type triterpenoid. The molecular structures of these compounds were elucidated by means of NMR, MS and other spectroscopic techniques, as well as by comparison with literature data. Anti-Leishmania activity and cytotoxic activity against A549 human lung adenocarcinoma cells were also examined.     

Dianthosaponins A-F, triterpene saponins, flavonoid glycoside, aromatic amide glucoside and γ-pyrone glucoside from Dianthus japonicus

From aerial parts of Dianthus japonicus, six new and seven known oleanane-type triterpene saponins were isolated. The structures of the new saponins, named dianthosaponins A-F, were elucidated by means of high resolution mass spectrometry, and extensive inspection of one- and two-dimensional NMR spectroscopic data. A new C-glycosyl flavone, a glycosidic derivative of anthranilic acid amide and a maltol glucoside were also isolated.     

Tricalysionoside A, a megastigmane gentiobioside, sulfatricalysines A-F, and tricalysiosides X-Z, ent-kaurane glucosides, from the leaves of Tricalysia dubia

Further isolation work on the water-soluble fraction of a MeOH extract of Tricalysia dubia afforded one new megastigmane gentiobioside, named tricalysionoside A (1), and three sulfates, named sulfatricalysines A-C (2-4). Extensive isolation work on the 1-BuOH-soluble fraction of a MeOH extract of T. dubia yielded sulfatricalysines D-F (5-7) and three new ent-kaurane glucosides, named tricalysiosides X-Z (8-10). The structures of the new compounds were elucidated by analyses of one- and two-dimensional NMR spectroscopic data. The absolute stereochemistry of tricalysionoside A (1) was established by modified Mosher's method.     

Observation of ultrafast Q-band fluorescence in horse heart cytochrome c in reduced and oxidized forms

The dynamics of fluorescence from horse heart cytochrome c is investigated in reduced (ferrous) and oxidized (ferric) forms by a streak camera and an up-conversion technique under B-band excitation at 415 nm. In the reduced form, we found the Q-band emission at 550 and 600 nm originated from the S(1) state in a short time range. A very broad continuum observed from 440 to 660 nm had only shown a slow component and was assigned to impurity. In the reduced form, the lifetime of S(1) was determined to be 120 fs by using the up-conversion technique. In the oxidized form, the S(1) lifetime was estimated to be 21 fs. These values are consistent with the values estimated from the quantum yield in order of their magnitude.     

Low-frequency modes of the benzoic acid dimer in chloroform observed by the optical Kerr effect

The low frequency Raman spectral density associated with the intermolecular hydrogen-bonding interaction of benzoic acid in chloroform was investigated through the ultrafast optically-heterodyne-detected optical Kerr effect. The low-frequency solute Raman spectrum was obtained by Fourier transform analysis and subtraction of the solvent spectrum from the solution spectrum. The resulting difference spectrum has a broad band below 150 cm(-1) with a peak at around 80 cm(-1). Previous studies of aromatic liquids suggest that the origin of such a low-frequency band is librational motion, although intermolecular hydrogen-bonding modes in benzoic acid may also contribute. To clarify these contributions to the low-frequency band, methyl benzoate was used to estimate the librational component; its structure is similar to benzoic acid, but it forms no intermolecular hydrogen bonds. Both librational and intermolecular modes were found to contribute to the low-frequency Raman spectrum of the dimer and thus can be separated. These experimental results were compared with the results of density functional theory calculations. In addition, the effect of deuteration on the Raman spectrum was also investigated.