Identification and characterization of endonuclein binding proteins: evidence of modulatory effects on signal transduction and chaperone activity

Background  

We have previously identified endonuclein as a cell cycle regulated WD-repeat protein that is up-regulated in adenocarcinoma of the pancreas. Now, we aim to investigate its biomedical functions.     

Cotorsion pairs associated with Auslander categories

Let N ≥ n + 1, and denote by K the convex hull of N independent standard gaussian random vectors in ℝⁿ. We prove that with high probability, the isotropic constant of K is bounded by a universal constant. Thus we verify the hyperplane conjecture for the class of gaussian random polytopes. Supported by the Clay Mathematics Institute and by NSF grant #DMS-0456590     

Holomorphic extension of eigenfunctions

Let X = G/K be a Riemannian symmetric space of non-compact type. We prove a theorem of holomorphic extension for eigenfunctions of the Laplace–Beltrami operator on X, by techniques from the theory of partial differential equations.     

Locating a minisum circle in the plane

We consider the problem of locating a circle with respect to existing facilities in the plane such that the sum of weighted distances between the circle and the facilities is minimized, i.e., we approximate a set of given points by a circle regarding the sum of weighted distances. If the radius of the circle is a variable we show that there always exists an optimal circle passing through two of the existing facilities. For the case of a fixed radius we provide characterizations of optimal circles in special cases. Solution procedures are suggested.     

Probing crystal structures and transformation reactions of ammonium molybdates by 14N MAS NMR spectroscopy

The unique high-resolution feature offered by 14N magic-angle spinning (MAS) NMR spectroscopy of ammonium ions has been used to characterize the crystal structures of various ammonium molybdates by their 14N quadrupole coupling parameters, i.e., CQ, the quadrupole coupling constant, and etaQ, the asymmetry parameter. Two polymorphs of diammonium monomolybdate, (NH4)2MoO4, recently structurally characterized by single-crystal X-ray diffraction (XRD) and named mS60 and mP60, show distinct but different 14N MAS NMR spectra from each of which two sets of characteristic 14N CQ and etaQ values have been obtained. Similarly, the well-characterized ammonium polymolybdates (NH4)2Mo2O7, (NH4)6Mo7O24.4H2O, and (NH4)6Mo8O27.4H2O also give rise to distinct and characteristic 14N MAS NMR spectra. In particular, it is noted that simulation of the experimental (NH4)6Mo7O24.4H2O spectrum requires an iterative fit with six independent NH4+ sites. For the slow spinning frequencies employed (nu(r) = 1500-3000 Hz), all 14N MAS NMR spectra of the ammonium molybdates in this study are fingerprints of their identity. These different 14N MAS NMR fingerprints are shown to be an efficient tool in qualitative and quantitative assessment of the decomposition of (NH4)2MoO4 in humid air. Finally, by a combination of the 14N and 95Mo MAS NMR experiments performed here, it has become clear that a recent report of the 95Mo MAS spectra and data for the mS60 and mP60 polymorphs of (NH4)2MoO4 are erroneous because the sample examined had decomposed to (NH4)2Mo2O7.     

Sugar-assisted kinetic resolution of amino acids and amplification of enantiomeric excess of organic molecules

The origins of biological homochirality have intrigued researchers since Pasteur's discovery of the optical activity of biomolecules. Herein, we propose and demonstrate a novel alternative for the evolution of homochirality that is not based on autocatalysis and forges a direct relationship between the chirality of sugars and amino acids. This process provides a mechanism in which a racemic mixture of an amino acid can catalyze the formation of an optically active organic molecule in the presence of a sugar product of low enantiomeric excess.     

Measurement of paclitaxel and its metabolites in human plasma using liquid chromatography/ion trap mass spectrometry with a sonic spray ionization interface

A quantitative liquid chromatography/ion trap mass spectrometry method for the simultaneous determination of paclitaxel, 6alpha-hydroxypaclitaxel and p-3'-hydroxypaclitaxel in human plasma has been developed and validated. 6alpha-,p-3'-Dihydroxypaclitaxel was also quantified using paclitaxel as a reference and docetaxel as an internal standard. The substances were extracted from 0.500 mL plasma using solid-phase extraction. The elution was performed with acetonitrile and the samples were reconstituted in the mobile phase. Isocratic high-performance liquid chromatography analysis was performed by injecting 50 microL of reconstituted material onto a 100 x 3.00 mm C12 column with a methanol:1% trifluoroacetic acid/ammonium trifluoroacetate in H(2)O 70:30 mobile phase at 350 microL/min. The [M+H](+) ions generated in the sonic spray ionization interface were isolated and fragmented using two serial mass spectrometric methods: one for paclitaxel (transition 854 --> 569 & 551) and the dihydroxymetabolite (transition 886 --> 585 & 567) and one for the hydroxy metabolites (transition 870 --> 585 & 567; transition 870 --> 569 & 551) and docetaxel ([M+Na](+), transition 830 --> 550). Calibration curves were created ranging between 0.5 and 7500 ng/mL for paclitaxel, 0.5 and 750 ng/mL for 6alpha-hydroxypaclitaxel, and 0.5 and 400 ng/mL for p-3'-hydroxypaclitaxel. Adduct ion formation was noted and investigated during method development and controlled by mobile phase optimization. In conclusion, a sensitive method for simultaneous quantification of paclitaxel and its metabolites suitable for analysis in clinical studies was obtained.     

Isolation of Escherichia coli inner membranes by metal affinity two-phase partitioning

As reduction of sample complexity is a central issue in membrane proteomic research, the need for new pre-fractionation methods is significant. Here we present a method for fast and efficient enrichment of Escherichia coli inner membranes expressing a His-tagged integral membrane L-fucose-proton symporter (FucP). An enriched inner membrane fraction was obtained from a crude membrane mixture using affinity two-phase partitioning in combination with nickel-nitrilotriacetic acid (Ni-NTA) immobilized on agarose beads. Due to interaction between the beads and FucP, inner membranes were selectively partitioned to the bottom phase of a polymer/polymer aqueous two-phase system consisting of poly(ethylene glycol) (PEG) and dextran. The partitioning of membranes was monitored by assaying the activity of an inner membrane marker protein and measuring the total protein content in both phases. The enrichment of inner membrane proteins in the dextran phase was also investigated by proteomic methodology, including sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), trypsin digestion and liquid chromatography in combination with tandem mass spectrometry (LC-MS/MS). Using a high level of significance (99.95%) in the subsequent database search, 36 proteins assigned to the inner membrane were identified in the bottom phase, compared to 29 when using the standard sucrose gradient centrifugation method for inner membrane isolation. Furthermore, metal affinity two-phase partitioning was up to 10 times faster than sucrose gradient centrifugation. The separation conditions in these model experiments provide a basis for the selective isolation of E. coli membranes expressing His-tagged proteins and can therefore facilitate research on such membrane proteomes.     

Ab initio potential-energy surface and rovibrational states of the HCN-HCl complex

A four-dimensional intermolecular potential-energy surface has been calculated for the HCN-HCl complex, with the use of the coupled cluster method with single and double excitations and noniterative inclusion of triples. Data for more than 13,000 geometries were represented by an angular expansion in terms of coupled spherical harmonics; the dependence of the expansion coefficients on the intermolecular distance R was described by the reproducing kernel Hilbert space method. The global minimum with De=1565 cm(-1) and Re=7.47a0 has a linear HCN-HCl hydrogen-bonded structure with HCl as the donor. A secondary hydrogen-bonded equilibrium structure with De=564 cm(-1) and Re=8.21a0 has a T-shaped geometry with HCN as the donor and the acceptor HCl molecule nearly perpendicular to the intermolecular axis. This potential surface was used in a variational approach to compute a series of bound states of the isotopomers HCN-H35Cl, DCN-H35Cl, and HCN-H37Cl for total angular momentum J=0,1,2 and spectroscopic parities e, f. The results could be analyzed in terms of the approximate quantum numbers of a linear polyatomic molecule with two coupled bend modes, plus a quantum number for the intermolecular stretch vibration. They are in good agreement with the recent high resolution spectrum of Larsen et al. [Phys. Chem. Chem. Phys. 7, 1953 (2005)] in the region of 330 cm(-1) corresponding to the HCl libration. The (partly anomalous) effects of isotopic substitutions on the properties of the complex were explained with the aid of the calculations.