Proton and lithium cation affinities calculated with floating orbital geometry optimization (FOGO)

The FOGO method is used to calculate proton affinities and lithium cation affinities. The molecules of primary interest in this study are the methyl-substituted amines. In addition, the lithium cation affinity of HF, H₂O, CH₃OH, H₂CO, and HCN are calculated for comparison. Geometries of all species are fully optimized with a double-zeta (DZ) basis set, including polarization on hydrogen and the first-row elements by floating orbitals. Comparison with experimental values demonstrates that structural data and proton affinities resulting from this type of ab initio calculation are of chemical accuracy. The lithium cation affinities are also reasonably well reproduced, but the small experimental differences are not within the accuracy, which can be expected from this type of calculation.     

Geometry optimization in ab initio SCF calculations: Part IV. Energy barriers and dipole moments obtained with floating orbital geometry optimization (FOGO)

The floating orbital geometry optimization (FOGO) described previously is applied to H₂O₂, NH₃, HNC, HNO, HNCO, and CH₃OH. In the FOGO method we apply two analytically calculated energy gradients in a variable metric method. Some orbitals are no longer fixed on the corresponding nuclei, but their position is optimized simultaneously with the nuclear coordinates. It is shown that relative energies (e.g. rotational barriers) are obtained with similar accuracy to basis sets including polarization functions. Further, it is confirmed that FOGO yields excellent dipole moments. The FOGO method involves a considerable time saving compared to conventional calculations with DZ + P basis sets.     

Secondary metabolites of the coelenterate echinopora lamellosa

The marine coelenterate Echinopora lamellosa (class Anthozoa, family Scleractinidae) was found to contain a number of unprecedented secondary metabolites which were isolated and identified as smilagenin (I), neodunol methyl ether (II), glycyrrhetic acid (III), 3β-acetoxyglycyrrhetic acid (IV), and 3β-acetoxy-11-deoxoglycyrrhetic acid (V). The structure of neodunol methyl ether was confirmed and its absolute configuration determined by the x-ray diffraction method.     

The solution structure and reactivity of decavanadate

The oxygen-exchange reaction of V₁₀O with bulk water has been followed by time-dependent ¹⁷O-NMR spectroscopy (buffered solutions, pH ～ 5.5, [V₁₀]_total ～ 0.17m, T = 298 K). It is shown that all seven structurally different sites of O-atoms are kinetically similar but, in contrast to earlier studies, not identical (6 h ? ‘t_1/2’ ? 11 h). The kinetic similarity of the various structural sites implies the some (but not full) O scrambling is involved. Two possible mechanisms with a ‘half-bonded’ and an ‘open’ intermediate are discussed in detail to interpret the experimental results. A computer simulation of the exchange reaction based on these models is presented. It is shown that the ‘half-bonded-intermediate’ mechanism is consistent with the experimental data and the following parameters are calculated: formation of the intermediate: k₁ = 5.8 · 10^?3 s^?1, k_?1 = 6.7 · 10^?2 s^?1, [intermediate]_∞ ≈ 8%; all activated O-atoms exchange within the lifetime of the intermediate (τ ～ 15 s), and the calculated exchange rate of the intermediate (k₂ ? 0.60 s^?1) is consistent with earlier assumptions (k₂ ≈ 0.5 s^?1). It is shown that a simulation based on the ‘open-intermediate’ mechanism results in kinetic parameters which are not consistent with the kinetics of the formation of cyclic metavanadates ((VO)_n, n = 4,5) from decavanadate, since the required formation rate is by a factor ～ 10² too fast, and the equilibrium concentration of metavanadates is by a factor of ～ 2 too large (under the conditions of the O-exchange experiments of decavanadate (T = 298 K, [V₁₀]_total ≈ 0.17m, pH ～ 5.55) the total amount of metavanadates present is ～ 8%, with [(VO)₄]/[(VO)₅] ～ 4:1; a qualitative analysis of the kinetics of the formation of metavanadates (v_o kinetics; the exact mechanism of the back-reaction (at least second-order) is not known with certainty) leads to k₁ ? 4·10^?5 s^?1). O exchange of decavanadates via equilibrated metavanadates would lead to full scrambling of the O sites and is not consistent with the observed differences in the exchange rates. From the qualitative kinetic parameters of the metavanadate formation kinetics, it can be concluded that any contribution of an ‘open’ or an ‘metavanadate’ mechanism is of the order of 1–2% at most.     

Partial Synthesis and Characterization of the Mono-and Diepoxides of β-Cryptoxanthin

β-Cryptoxanthin ( 1 ) was acetylated and then epoxidized with monoperoxyphthalic acid. After hydrolysis, repeated chromatography, and crystallization, (3S,5R,6S)-5,6-epoxy-β-cryptoxanthin ( 3 ), (3S,5S,6R)-5,6-epoxy-β-cryptoxanthin ( 4 ), (3R,5′R,6′R)-5′,6′-epoxy-β-cryptoxanthin ( 5 ), (3S,5R,6S,5′R,6′S)-5,6:5′,6′-diepoxy-β-cryp-toxanthin ( 6 ), and (3S,5S,6R,5′S,6′R)-5,6:5′,6′-diepoxy-β-cryptoxanthin ( 7 ) were isolated as main products and characterized by their UV/VIS, CD, ¹H- and ¹³C-NMR, and mass spectra. The comparison of the carotenoid isolated from yellow, tomato-shaped paprika (Capsicum annuum var. lycopersiciforme flavum) with 3–5 strongly supports the structure of 3 for the natural product.     

A Variable-Pressure 2D 1H-NMR Study of the Mechanism of Trimethyl Phosphate Intermolecular Exchange and cis/trains-Isomerisation of Tetrachlorobis(trimethyl phosphate)zirconium(IV)

In chloroform, [ZrCl₄·2(MeO)₃PO] exists in both cis- and trans-isomeric forms. Three reactions can be envisaged in the presence of excess (MeO)₃PO = L: (1) cis-[ZrCl₄·2L] + *L?cis-[ZrCl₄·L*L]+ L; (2) trans-[ZrCl₄·2L] + *L ? trans-[ZrCl₄·L*L] + L; (3) cis-[ZrCl₄·2L]? trans-[ZrCl₄·2L]. To distinguish between these possible reaction pathways, we have used 2D ₁H-NMR spectroscopy. For the first time, variable-pressure 2D exchange spectra were used for mechanistic assignments. cis/trans-Isomerisation was found to be the fastest reaction (in CHCl₃/CDCl₃), with a small acceleration at higher pressure: it is concluded to be an intramolecular process with a slightly contracted six-coordinate transition state. The intermolecular (MeO)₃PO exchange on the cis- and trans-isomer are second-order processes and are strongly accelerated by increased pressure: I_a mechanisms are suggested without ruling out limiting A mechanisms.     

Mechanistic diversity covering 15 orders of magnitude in rates: cyanide exchange on [M(CN)(4)](2-) (M = Ni, Pd, and Pt)

Kinetic studies of cyanide exchange on [M(CN)(4)](2-) square-planar complexes (M = Pt, Pd, and Ni) were performed as a function of pH by (13)C NMR. The [Pt(CN)(4)](2-) complex has a purely second-order rate law, with CN(-) as acting as the nucleophile, with the following kinetic parameters: (k(2)(Pt,CN))(298) = 11 +/- 1 s(-1) mol(-1) kg, DeltaH(2) (Pt,CN) = 25.1 +/- 1 kJ mol(-1), DeltaS(2) (Pt,CN) = -142 +/- 4 J mol(-1) K(-1), and DeltaV(2) (Pt,CN) = -27 +/- 2 cm(3) mol(-1). The Pd(II) metal center has the same behavior down to pH 6. The kinetic parameters are as follows: (k(2)(Pd,CN))(298) = 82 +/- 2 s(-1) mol(-1) kg, DeltaH(2) (Pd,CN) = 23.5 +/- 1 kJ mol(-1), DeltaS(2) (Pd,CN) = -129 +/- 5 J mol(-1) K(-1), and DeltaV(2) (Pd,CN) = -22 +/- 2 cm(3) mol(-1). At low pH, the tetracyanopalladate is protonated (pK(a)(Pd(4,H)) = 3.0 +/- 0.3) to form [Pd(CN)(3)HCN](-). The rate law of the cyanide exchange on the protonated complex is also purely second order, with (k(2)(PdH,CN))(298) = (4.5 +/- 1.3) x 10(3) s(-1) mol(-1) kg. [Ni(CN)(4)](2-) is involved in various equilibrium reactions, such as the formation of [Ni(CN)(5)](3-), [Ni(CN)(3)HCN](-), and [Ni(CN)(2)(HCN)(2)] complexes. Our (13)C NMR measurements have allowed us to determine that the rate constant leading to the formation of [Ni(CN)(5)](3-) is k(2)(Ni(4),CN) = (2.3 +/- 0.1) x 10(6) s(-1) mol(-1) kg when the following activation parameters are used: DeltaH(2)() (Ni,CN) = 21.6 +/- 1 kJ mol(-1), DeltaS(2) (Ni,CN) = -51 +/- 7 J mol(-1) K(-1), and DeltaV(2) (Ni,CN) = -19 +/- 2 cm(3) mol(-1). The rate constant of the back reaction is k(-2)(Ni(4),CN) = 14 x 10(6) s(-1). The rate law pertaining to [Ni(CN)(2)(HCN)(2)] was found to be second order at pH 3.8, and the value of the rate constant is (k(2)(Ni(4,2H),CN))(298) = (63 +/- 15) x10(6) s(-1) mol(-1) kg when DeltaH(2) (Ni(4,2H),CN) = 47.3 +/- 1 kJ mol(-1), DeltaS(2) (Ni(4,2H),CN) = 63 +/- 3 J mol(-1) K(-1), and DeltaV(2) (Ni(4,2H),CN) = - 6 +/- 1 cm(3) mol(-1). The cyanide-exchange rate constant on [M(CN)(4)](2-) for Pt, Pd, and Ni increases in a 1:7:200 000 ratio. This trend is modified at low pH, and the palladium becomes 400 times more reactive than the platinum because of the formation of [Pd(CN)(3)HCN](-). For all cyanide exchanges on tetracyano complexes (A mechanism) and on their protonated forms (I/I(a) mechanisms), we have always observed a pure second-order rate law: first order for the complex and first order for CN(-). The nucleophilic attack by HCN or solvation by H(2)O is at least nine or six orders of magnitude slower, respectively than is nucleophilic attack by CN(-) for Pt(II), Pd(II), and Ni(II), respectively.     

The effect of pyridinecarboxylate chelating groups on the stability and electronic relaxation of gadolinium complexes

The ligand N,N'-bis[(6-carboxy-2-pyridylmethyl]ethylenediamine-N,N'-diacetic acid (H(4)bpeda) was synthesised using an improved procedure which requires a reduced number of steps and leads to a higher yield with respect to the published procedure. It was obtained in three steps from diethylpyridine-2,6-dicarboxylate and commercially available ethylenediamine-N,N[prime or minute]-diacetic acid with a total yield of approximately 20%. The crystal structure of the hexa-protonated form of the ligand which was determined by X-ray diffraction shows that the four carboxylates and the two amines are protonated. The crystal structure of the polynuclear complex [Gd(bpeda)(H(2)O)(2)](3)[Gd(H(2)O)(6)](2)Cl(3)(2), isolated by slow evaporation of a 1:1 mixture of GdCl(3) and H(4)bpeda at pH approximately 1, was determined by X-ray diffraction. In complex three [Gd(bpeda)(H(2)O)(2)] units, containing a Gd(III) ion ten-coordinated by the octadentate bpeda and two water molecules, are connected in a pentametallic structure by two hexa-aquo Gd(3+) cations through four carboxylato bridges. The protonation constants (pK(a1)= 2.9(1), pK(a2)= 3.5(1), pK(a3)= 5.2(2), and pK(a4)= 8.5(1)) and the stability constants of the complexes formed between Gd(III) and Ca(II) ions and H(4)bpeda (log beta(GdL)= 15.1(3); log beta(CaL)= 9.4(1)) were determined by potentiometric titration. The unexpected decrease in the stability of the gadolinium complex and of the calcium complex of the octadentate ligand bpeda(4-) with respect to the hexadentate ligand edta(4-) has been interpreted in terms of an overall lower contribution to stability of the metal-nitrogen interactions. The EPR spectra display very broad lines (apparent DeltaH(pp) approximately 800-1200 G at X-band and 90-110 G at Q-band depending on the temperature), indicating a rapid transverse electron spin relaxation. At X-band, Gd(bpeda) is among the fastest relaxing Gd(3+) complexes to date suggesting that the presence of pyridinecarboxylate chelating groups in itself does not lead to slow electron relaxation.     

Conformational Analysis of 1,2:3,4-Diepoxides: Ab Initio and semiempirical molecular-orbital calculations

Using semiempirical and ab initio procedures, the most stable conformations of meso- and rac-bioxirane and of some substituted 1,2:3,4-diepoxides were calculated. For threo-diepoxides (having the same relative configurations as rac-bioxirane, 3 ), two stable conformations with CCCC dihedral angles of ca. 90 and ca. 270° were found. For erythro-diepoxides (derivatives of meso-bioxirane, 4 ) the calculations suggest three preferred conformations with corresponding dihedral CCCC angles of ca. 90°, ca. 180°, and ca. 270°. The calculations are in fair agreement with the experimental data available for the unsubstituted compounds 3 and 4 .