Estimating relative free energies from a single ensemble: Hydration free energies

The ability to determine the free energy of solvation for a number of small organic molecules with varying sizes and properties from the coordinate trajectory of a single simulation of a given reference state was investigated. The relative free energies were estimated from a single step perturbation using the perturbation formula. The reference state consisted of a cavity surrounded by solvent. To enhance sampling a soft-core interaction was used for the cavity. The effect of the size of the cavity, the effective core height, and the length of simulation on the ability to reproduce results obtained from thermodynamic integration calculations was considered. The results using a single step perturbation from an appropriately chosen initial state were comparable to results from thermodynamic integration calculations for a wide range of compounds. Using a large number of compounds the computational efficiency was potentially increased by 2–3 orders of magnitude over traditional free energy approaches. Factors determining the efficiency of the approach are discussed. ©1999 John Wiley & Sons, Inc. J Comput Chem 20: 1604–1617, 1999     

Highly Substituted Spiro[4.4]nonatrienes from a β-Amino-Substituted α,β-Unsaturated Fischer Carbene Complex and Three Molecules of an Arylalkyne

A novel mode of reaction towards arylethynes is shown by the β-trimethylsilyl-substituted α,β-unsaturated Fischer carbene complexes 1 . A mixture of the isomeric, highly substituted spiro[4.4]nonatrienes 2 and 3 is formed by the formal insertion of three alkyne molecules and subsequent cyclization (see scheme). Such selective triple insertions of alkynes into ethenylcarbene complexes have not been previously observed.     

Anticancer Agents from the Australian Tropical Rainforest: Spiroacetals EBC‐23, 24, 25, 72, 73, 75 and 76

EBC‐23, 24, 25, 72, 73, 75 and 76 were isolated from the fruit of Cinnamomum laubatii (family Lauraceae) in the Australian tropical rainforests. EBC‐23 ( 1 ) was synthesized stereoselectively, in nine linear steps in 8 % overall yield, to confirm the reported relative stereochemistry and determine the absolute stereochemistry. Key to the total synthesis was a series of Tietze–Smith linchpin reactions. The novel spiroacetal structural motif, exemplified by EBC‐23 ( 1 ), was found to inhibit the growth of the androgen‐independent prostate tumor cell line DU145 in the mouse model, indicating potential for the treatment of refractory solid tumors in adults.     

Fast method for monitoring phospholipase A2 activity by liquid chromatography–electrospray ionization mass spectrometry

A new liquid chromatography–electrospray ionization mass spectrometry (LC–ESI-MS) method for the fast determination of phospholipase A₂ (PLA₂) activity has been developed. For the first time, the method allows the parallel detection of glycerophosphatidylcholine (GroPCho) as PLA₂ substrate as well as of its products fatty acid (FA) and lyso-GroPCho. ESI-MS was carried out in negative ion mode, detecting the FA as [M − H]⁻ ions and the lyso-GroPCho and GroPCho as acetate adducts [M + Ac]⁻. Utilizing a fast gradient on a short C₅-modified silica gel column with 3 μm particles, five GroPChos, five FAs and six lyso-GroPChos could be separated according to their chain length in less than 3 min. A very high average chromatographic efficiency of 41,200 theoretical plates (plate height 0.5 μm) was achieved for the separation of the GroPChos. The method was applied for monitoring the release of arachidonic acid (20:4 FA) and 1-stearoyl-lyso-sn-GroPCho (18:0 GroPCho) from unilamellar vesicles of 1-stearoyl-2-arachidonoyl-sn-GroPCho (18:0/20:4 GroPCho). With a limit of detection of 0.5 pmol (total amount injected on column) for the FAs and lyso-GroPChos and 1.5 pmol for the GroPChos as well as a linear range of 1.5 decades, the method has proven to be suitable for the monitoring of different secretory PLA₂ (sPLA₂) conversions. Furthermore, it was applied to screen a small library of PLA₂ inhibitors for their activity towards sPLA₂ type V and snake venom of Bothrops moojeni. In both cases, active samples could be directly identified. With its short analysis time, its high chromatographic efficiency and the parallel detection of substrate and all products, the developed LC–ESI-MS method is well suited for the analysis of PLA₂ activity.     

Activation of Hydrogen by Palladium(0): Formation of the Mononuclear Dihydride Complex trans‐[Pd(H)2(IPr)(PCy3)]

An even split : In sharp contrast with the general behavior of Pd⁰ complexes, [Pd(IPr)(PCy₃)] is able to activate the H? H bond. The resulting trans‐[Pd(H)₂(IPr)(PCy₃)] is the first isolated mononuclear dihydride palladium compound. Its formation is supported by multinuclear NMR spectroscopy, density functional calculations, and X‐ray diffraction studies. The stability and reactivity of this new species are examined.

     

An Amphiphilic Resin‐dispersion of Nanoparticles of Platinum (ARP‐Pt): A Highly Active and Recyclable Catalyst for the Aerobic Oxidation of a Variety of Alcohols in Water

Please recycle! An amphiphilic polystyrene‐poly(ethylene glycol) resin‐dispersion of nanoparticles of platinum (ARP‐Pt) is developed, with the nanoparticles exhibiting a narrow size distribution throughout the resin. ARP‐Pt offers a sustainable chemistry alternative as a useful and readily recyclable catalyst for the aerobic oxidation of a wide variety of alcohols.