Rational Synthesis of Antiaromatic 5,15‐Dioxaporphyrin and Oxidation into β,β‐Linked Dimers

5,15‐Dioxaporphyrin was synthesized for the first time by a nucleophilic aromatic substitution reaction of a nickel bis(α,α′‐dibromodipyrrin) complex with benzaldoxime, followed by an intramolecular annulation of the α‐hydroxy‐substituted intermediate. This unprecedented molecule is a 20π‐electron antiaromatic system, in terms of Hückel's rule of aromaticity, because lone pair electrons of oxygen atoms are incorporated into the 18π‐electron conjugated system of the porphyrin. A theoretical analysis based on the gauge‐including magnetically induced current method confirmed its antiaromaticity and a dominant inner ring pathway for the ring current. The unique reactivity of 5,15‐dioxaporphyrin forming a β,β‐linked dimer upon oxidation was also revealed.     

Bioactivation of knitted cellulose scaffolds by strontium

Strontium has attained increasing interest in the treatment of osteoporosis due to its anabolic as well as antiresorptive activity. Knitted cellulose scaffolds with a porosity suitable to promote bone tissue ingrowth and vascularisation were doped with SrCO₃. The in vitro bioactivity of the modified scaffolds was proven by formation of hydroxyapatite during exposure to simulated body fluid. The Sr-release kinetics during static exposure to simulated body fluid is dominated by an accelerated Sr-release in the initial state followed by a reduced release corresponding to a diffusion controlled rate. Microstructural analyses indicate that initially precipitated SrCO₃ transforms to Sr _x Ca_1−x CO₃ solid solutions that subsequently serve as a template for the precipitation of bone like carbonated hydroxyapatite under conditions simulating the inorganic part of the human blood plasma.     

Benzamidinium d-glucuronate: Spectroscopic and structural elucidation

Benzamidinium d-glucuronate (1) crystallizes in the orthorhombic space group P2₁2₁2₁ and exhibits a 3 D network with molecules linked by moderate intermolecular hydrogen bonds (HNH…O_(solvent) 2.993 Å, HNH…OCO 2.894 Å, HNH…O_(cycle) 2.844 Å, OH…NH₂ 2.931 Å, OH…O_(solvent) 2.894, 2.924 and 2.715 Å (stronger)) with participation of cations, anions and solvent molecules. The IR-band assignment of carbohydrate moieties is elucidated by a comparison between the types and bond lengths of intermolecular interactions with participation of OH groups in d-glucuronate and linear polarized IR-(IR-LD) spectroscopic data. Experimental results are supported by theoretical ab initio calculations of benzamidinium cation and d-glucuronate anion.     

Chromophore/DNA interactions: femto- to nanosecond spectroscopy, NMR structure, and electron transfer theory

The mechanism of photoinduced hole injection into DNA has been studied using an integrated approach that combines NMR structural analysis, time-resolved spectroscopy, and quantum-chemical calculations. A covalently linked acridinium derivative, the protonated 9-amino-6-chloro-2-methoxyacridine (X+), is replacing a thymine and separated from either guanine (G) or the easier to oxidize 7-deazaguanine (Z) by one adenine.thymine (A.T) base pair. The key features of this donor/acceptor system are the following: (i) In more than 95% of the duplexes, X+ is located in a central, coplanar position between the neighboring A.T base pairs with its long axis in parallel showing minimal twist and tilt angles (<15 degrees). The complementary adenine base is turned out into the extrahelical space. In a minority of less than 5%, X+ is found to be still attached to the duplex. X+ is most probably associated with one of the phosphates, since it is neither intercalated between more remote base pairs nor bound to sugars or grooves. This minority characterized by an excited state lifetime >10 ns gives rise to a small background signal in time-resolved measurements and contributes predominantly to steady-state fluorescence spectra. (ii) Although the intercalation mode of X+ is well defined, the NMR structure reveals that there are two conformations of X+ with respect to the arrangement of its methoxy substituent. In one conformation, the methoxy group is in the plane of the chromophore, while, in the other extraplanar conformation, the methoxy group forms an angle of 70 degrees with the acridinium ring. The fluorescence decay of 5'-ZAX and 5'-GAX tracts can be fitted to a biexponential function with similar amplitudes, reflecting the oxidation dynamics of G and Z, with the slower rate being determined by larger thermal activation energy. The attribution of biexponential electron transfer (ET) dynamics to the bimodal orientation of the methoxy group at the acridinium is supported by quantum-chemical calculations. These predict a larger free energy change for hole transfer in the nonplanar conformation as compared to the planar one, whereas the difference in the electronic couplings is negligible. (iii) Kinetic studies of the directionality of the 1(X+)* induced hole injection reveal similarly fast decay components in both directions of the duplex, that is, in 5'-ZAX and 5'-XAZ, with the amplitude of the fast component being significantly reduced in 5'-XAZ. The NMR structure shows that local structural deviations from B-DNA are much more pronounced in the 3'-5' direction than in the 5'-3' direction. According to quantum-chemical calculations, the directionality of charge injection is not a universal feature of the DNA duplex but depends critically on the rotation angle of the aromatic plane of the acridinium within the pi stack. The arrangement of X+ in 5'-ZAX and 5'-XAZ corresponds to a conformation with weak directionality of the electronic couplings. The increased disorder in the 3'-5'direction favors slow hole transfer components at the expense of the fast ones. (iv) A comparison of the hole transfer in 5'-GAX and 5'-ZAG shows that classical Marcus theory can explain the ratio of the charge shift rates of more than 2 orders of magnitude on the basis of a free energy difference between G and Z of 0.3 eV. Both NMR structures and quantum-chemical calculations justify the appreciable neglect of differences of electronic couplings as well as in the reorganization energy in 5'-GAX and 5'-ZAG. Despite the attractive concept for the behavior of floppy DNA oligonucleotides, in this acridinium/DNA system, there is no evidence for conformational gating, that is, for fluctuations in the electronic couplings that permit the ET to occur.     

Imaging of carbon nanotubes with tin-palladium particles using STEM detector in a FE-SEM

Upgraded FE-SEM with STEM detector permits the observation and imaging of thin materials such as carbon nanotubes by transmitted electrons directly in a FE-SEM. It is important to know the resolution of transmitted electrons mode compared to the classical secondary electrons mode. The resolution was measured with SMART macro. This routine permits to quickly determine resolution of a micrograph, based on fast Fourier transform analysis. An optimum working distance value was found around 6mm for an accelerating voltage equal to 10 keV. In addition to this, it was shown that the resolution obtained in bright field and secondary electron images at 15 keV had appreciatively the same resolution. Also, it was shown that images in dark field mode have a poorer resolution compared with bright field transmitted electrons and secondary electrons images.     

Anion Recognition with Antimony(III) and Bismuth(III) Triaryl-Based Pnictogen Bonding Receptors

The synthesis and characterisation of a library of acyclic antimony(III) and bismuth(III) triaryl pnictogen bonding (PnB) receptor systems are reported. In the first-generation receptor series, quantitative ¹H NMR chloride titration experiments in THF solvent media reveal halide anion binding potency is intimately correlated with both the electronic-withdrawing nature of the aryl- substituent and the polarisability of the PnB donor. Further extensive anion binding investigations with the most potent Sb- and Bi-based PnB receptors: 1⋅Sb^2CF3 and 1⋅Bi^2CF3 , reveal novel selectivity profiles, both displaying Cl⁻ selectivity relative to the heavier halides and, impressively, to a range of highly basic oxoanions. The synthesis and preliminary chloride anion binding studies of a series of novel tripodal tris-proto-triazole triaryl Sb(III) and Bi(III) mixed PnB-HB receptor systems are also described. Whereas parent triphenyl Sb(III) and Bi(III) compounds are incapable of binding Cl⁻ in THF solvent media, the PnB-triazole HB host systems exhibit notable halide affinity.     

Square planar Ni(II) thiosemicarbazone complexes as functional models for carbon monoxide dehydrogenase

Two Ni(II) complexes, [Ni(dmoTSCH)Cl] (1) and [Ni(dmoPhTSCH)Cl] (2) of the tridentate thiosemicarbazone ligands diacetylmonooxime thiosemicarbazone (dmoTSCH₂) and diacetylmonooxime (4-phenyl)thiosemicarbazone (dmoPhTSCH₂) have been synthesized. X-ray crystal structure of [Ni(dmoTSCPhTSCH)Cl] (2) indicates that the Ni(II) assumes a square planar geometry in the complexes, with the ligand coordinated in a monoanionic N,N,S donor mode and the fourth coordination position of Ni(II) is occupied by a chloride ion. Cyclic and differential pulse voltammetric experiments suggest that the Ni(II) complexes can undergo a two electron reduction at about ?1.0V. It is shown that the Ni(II) complexes in DMF or DMSO solutions can mimic CO-dehydrogenase activity by oxidizing CO to CO₂ in presence of a base like NaOAc and a sacrificial electron acceptor like methyl viologen and the colour of the resultant MV^.+ can be used to monitor the reaction.     

A Rapid,Nearly Quantitative Conversion of Codeine to Hydrocodone

A very rapid, two-step, virtually quantitative synthesis of hydrocodone from codeine, via the intermediacy of dihydrocodeine, has been developed.     

Sensitivity of shear rate in artificial grafts using automatic differentiation

An accurate numerical simulation of blood requires the solution of incompressible Navier–Stokes equations coupled with specific constitutive models. We consider a generalized Newtonian fluid model in which viscosity depends on shear rate, accounting for the shear‐thinning behavior of blood. Previous work on the design of an artificial graft indicated that there is an influence of the fluid model on the solution of the partial differential equation‐constrained shape optimization problem. Therefore, we carry out a sensitivity analysis of the actual implementation of the flow solver using automatic differentiation (AD). We compare the sensitivities of shear rate with respect to viscosity for different configurations and validate the truncation‐error‐free sensitivities obtained from AD with those based on divided differencing and, if available, with analytic derivatives. Copyright © 2009 John Wiley & Sons, Ltd.