The characterisation of polyether ionophore veterinary drugs by HPLC-electrospray MS.

We undertake the determination of a wide range of veterinary drug residues in a range of animal products. Various screening analyses are employed, followed by HPLC-API (atmospheric pressure ionisation)-MS for the unequivocal confirmation of significant positives. EU legislation for the use of GC-MS as a confirmatory technique requires the successful monitoring of at least four diagnostic ions and although no such requirement exists for HPLC-MS confirmation, a similar requirement would seem appropriate. Until recently, reports describing the electrospray MS confirmation of residues of the polyether ionophores have been based on monitoring one or two ions. We have found that the addition of ammonium acetate to the HPLC mobile phase, in conjunction with 'cone voltage' or 'skimmer' assisted fragmentation, is a convenient way of producing additional diagnostic ions from polyether ionophore compounds, without compromising the overall sensitivity. Results for lasalocid, the most widely used compound, are presented. Electrospray MS data and acquisition parameters for lasalocid, monensin, narasin and salinomycin are described. The advantage of this analytical approach is that it may be used to generate confirmatory data using a single quadrupole MS system, without the need for advanced MS instrumentation, e.g., MS-MS.     

Calix[4]Arenes in the partial cone conformation as ionophores in silver ion-selective electrodes

Two calix[4]arene derivatives, in the partial cone conformation, with sulfur-containing functionalities, were tested as neutral carrier ionophores in potentiometric silver-selective electrodes of conventional membrane and membrane-coated glassy carbon electrode types. Comparison with a calix[4]arene in the cone conformation was made. The membranes were prepared using either 2-nitrophenyl octyl ether or bis(ethylhexyl)sebacate as plasticizers and potassium tetrakis(p-chlorophenyl)borate as the lipophilic salt in a poly(vinyl chloride) matrix. Both calix[4]arenes yielded electrodes of good sensitivity (approx. 47 mV dec⁻¹) in the range 10⁻⁴–10⁻¹ M and excellent selectivity [log K_Ag,_MH+ < −1.5] of transition, alkali and heavy metal cations, including sodium, mercury(II) and lead(II) cations. Temperature effects and reproducibility of response were determined and the interfering effects of mercury(II) and lead (II) ions on the membranes were noted. The partial cone conformation allows improved selectivity over certain cations relative to calix[4]arenes in the cone conformation.     

Insertion of a small peptide of six amino acids into the β7–β8 loop of the p51 subunit of HIV-1 reverse transcriptase perturbs the heterodimer and affects its activities

Background  

HIV-1 RT is a heterodimeric enzyme, comprising of the p66 and p51 subunits. Earlier, we have shown that the β7-β8 loop of p51 is a key structural element for RT dimerization (Pandey et al., Biochemistry 40: 9505, 2001). Deletion or alanine substitution of four amino acid residues of this loop in the p51 subunit severely impaired DNA binding and catalytic activities of the enzyme. To further examine the role of this loop in HIV-1 RT, we have increased its size such that the six amino acids loop sequences are repeated in tandem and examined its impact on the dimerization process and catalytic function of the enzyme.     

Use of surfactants to remove water-based inks from plastic film: effect of calcium ion concentration and length of surfactant hydrophobe

Effective plastic film deinking could permit the reuse of recycled polymer to produce clear film, reduce solid waste for landfills, reduce raw material demand for polymer production, and aid process economics. In this study, the deinking of a commercial polyethylene film printed with water-based ink was studied using surfactants in the presence of hardness ions (calcium ions) at various pH levels. The electrostatic properties of ink particles in a washing bath were also investigated. Synthetic anionic surfactant or fatty acid soap in the presence of calcium ions at alkaline pH levels was found to be nearly as effective at deinking as cationic, nonionic, or amphoteric surfactants alone. However, adding calcium ions decreases the deinking effectiveness of cationic, nonionic, and amphoteric surfactants. Increasing the length of the ionic surfactant hydrophobe enhances deinking. Zeta potential measurements showed that water-based ink particles in water reach the point of zero charge (PZC) at a pH of about 3.6, above which ink particles are negatively charged, so cationic surfactant tends to adsorb better on the ink than anionic surfactant above the PZC in the absence of calcium. As the cationic surfactant concentration is varied between 0.005 and 25 mM, the zeta potential of the ink particles reverses from negative to positive owing to adsorption of cationic surfactant. For anionic surfactants, added calcium probably forms a bridge between the negatively charged ink and the negatively charged surfactant head groups, which synergizes adsorption of the surfactant and aids deinking. In contrast, calcium competes for adsorption sites with cationic and nonionic surfactants, which inhibits deinking. All the surfactants studied here disperse ink particles effectively in the washing bath above pH 3 except for the ethoxylated amine surfactant.     

Recognition of base-pairing by DNA polymerases during nucleotide incorporation: the properties of the mutagenic nucleotide dPTP alphaS

The highly mutagenic nucleoside dP (6-(2-deoxy-beta-D-erythro-pentofuranosyl)-3,4-dihydro-6H,8H-pyrimido[4,5-c][1,2]oxazin-2-one) is a bicyclic analogue of N4-methoxy-2'-deoxycytidine. It exists as a mixture of its imino and amino tautomers in solution with a ratio of about 10:1 based on its tautomeric constant. The bicyclic nature of the heterocycle P restrains the amino substituent in an anti conformation and permits effective Watson-Crick base-pairing using either tautomer. The specificity of incorporation of dP by the 3'-5'-exonuclease-free Klenow fragment of DNA polymerase I (exo-free Klenow) has been studied using the 5'-(1-thio)triphosphate dPTP alphaS in combination with phosphorothioate-specific sequencing of the DNA products. The method provides a convenient qualitative assay for studying nucleotide incorporation and reveals for the first time a potential role for the minor tautomeric forms of the natural DNA bases in base misinsertion (substitution mutagenesis) during replication.     

Superelastic collisions of electrons with excited Mn+

Excited Mn⁺ ions formed by electron ionization of Mn₂(CO)₁₀ are deexcited in superelastic electron-ion collisions. The ions are held in the trap of a Fourier transform ion cyclotron resonance spectrometer and subjected to bombardment by an electron beam of varying energy. The population of excited Mn⁺ ions after exposure to the beam is monitored by examining reaction of the trapped Mn⁺ ions with Cr(CO)₆. Charge transfer to form Cr(CO) ₆ ⁺ is exothermic and efficient only for excited Mn⁺. It is found that deexcitation is read if y observable for electrons with energies less than 2 eV.     

In situ DMSO hydration measurements of HTS compound libraries

Compounds used in high throughput screening (HTS) are typically dissolved in DMSO. These solutions are stored automation-friendly racks of wells or tubes. DMSO is hygroscopic and quickly absorbs water from the atmosphere. When present in DMSO compound solutions, water can accelerate degradation and precipitation. Understanding DMSO hydration in an HTS compound library can improve storage and screening methods by managing the impact of water on compound stability. A non-destructive, acoustic method compatible with HTS has been developed to measure water content in DMSO solutions. Performance of this acoustic method was compared with an optical technique and found to be in good agreement. The accuracy and precision of acoustic measurements was shown to be under 3% over the tested range of DMSO solutions (0% to 35% water by volume) and insensitive to the presence of HTS compounds at typical storage concentrations. Time course studies of hydration for wells in 384-well and 1536-well microplates were performed. Well geometry, fluid volume, well position and atmospheric conditions were all factors in hydration rate. High rates of hydration were seen in lower-volume fills, higher-density multi-well plates and when there was a large differential between the humidity of the lab and the water content of the DMSO. For example, a 1536-well microplate filled with 2microL of 100% DMSO exposed for one hour to a laboratory environment with approximately 40% relative humidity will absorb over 6% water by volume. Understanding DMSO hydration rates as well as the ability to reverse library hydration are important steps towards managing stability and availability of compound libraries.     

How to determine structures when single crystals cannot be grown: opportunities for structure determination of molecular materials using powder diffraction data

Many crystalline solids cannot be prepared as single crystals of sufficient size and/or quality for structure determination to be carried out using single crystal X-ray diffraction techniques. In such cases, when only polycrystalline powders of a material are available, it is necessary instead to tackle structure determination using powder X-ray diffraction. This article highlights recent developments in the opportunities for determining crystal structures directly from powder diffraction data, focusing on the case of molecular solids and giving particular attention to the most challenging stage of the structure determination process, namely the structure solution stage. In particular, the direct-space strategy for structure solution is highlighted, as this approach has opened up new opportunities for the structure determination of molecular solids. The article gives an overview of the current state-of-the-art in structure determination of molecular solids from powder diffraction data. Relevant fundamental aspects of the techniques in this field are described, and examples are given to highlight the application of these techniques to determine crystal structures of molecular materials.     

Contemporary Advances in the Use of Powder X-Ray Diffraction for Structure Determination

Many crystalline solids cannot be prepared in the form of single crystals of sufficient size and/or quality for investigation using single-crystal X-ray diffraction techniques, and the opportunity to carry out structure determination using powder diffraction data is therefore essential to understand the structural properties of such materials. Although the refinement stage of the structure determination process can be carried out fairly routinely from powder diffraction data using the Rietveld profile refinement technique, solving crystal structures directly from powder data is associated with several intrinsic difficulties. Nevertheless, substantial progress has been made in recent years in the scope and potential of techniques in this field. This article aims to highlight the types of structural problems for which structure determination may now be tackled directly from powder diffraction data, and contemporary applications across several chemical disciplines are presented. A brief survey of the underlying methodologies is given, with some emphasis on recently developed techniques for carrying out the structure-solution stage of the structure-determination process.