Sum-frequency vibrational spectroscopy of chiral liquids off and close to electronic resonance and the antisymmetric Raman tensor

The strength of the chiral vibrational peaks in infrared-visible sum-frequency (SF) vibrational spectra from isotropic chiral liquids is proportional to the square of the corresponding antisymmetric Raman element. Under the Born-Oppenheimer adiabatic approximation with nonadiabatic corrections, the antisymmetric Raman tensor is much weaker than the symmetric counterpart, but becomes significantly stronger as the input frequency (or the sum-frequency in SF generation) approaches electronic resonance. We verify the theory with experimental results obtained from infrared-visible doubly resonant sum-frequency generation from an isotropic solution of chiral molecules.     

A family of polynuclear cobalt and nickel complexes stabilised by 2-pyridonate and carboxylate ligands

The synthesis and structural characterisation of a series of cobalt and nickel cages are reported. Eight of these structures contain a [M10(mu3-OH)6(eta2, mu3-xhp),(eta2, mu2-O2CR)6]2+ core (where M = Co or Ni; xhp = 6-chloro- or 6-methyl-2-pyridonate: R = Me, Ph, CHMe2, CH2Cl, CHPh2 or CMe3), where the ten metal atoms describe a centred-tricapped-trigonal prism (ttp). The cage contains six hydroxide ligands around the central metal, and the exterior is coated with pyridonate and carboxylate ligands. For four of the cages additional metal centres are found attached to the upper and/or lower triangular faces of the trigonal prism, generating dodeca- and undecanuclear cages. Three further cages are reported that contain a metal core based on an incomplete centred-tetraicosahedron. These cages involve trimethylacetate as a ligand in company with either 6-methyl-2-pyridonate or 6-chloro-2-pyridonate. Comparison of these latter structures with the trigonal prisms reveal that they can be described as a pentacapped-trigonal prism missing one edge. Magnetic studies of three of the nickel cages with trigonal prismatic cores show spin ground states of S = 8, 4 and 2 for Ni12, Ni11 and Ni10 cages, respectively.     

Semiquinone radical-bridged M2 (M = Fe,Co, Ni) complexes with strong magnetic exchange giving rise to slow magnetic relaxation

The use of radical bridging ligands to facilitate strong magnetic exchange between paramagnetic metal centers represents a key step toward the realization of single-molecule magnets with high operating temperatures. Moreover, bridging ligands that allow the incorporation of high-anisotropy metal ions are particularly advantageous. Toward these ends, we report the synthesis and detailed characterization of the dinuclear hydroquinone-bridged complexes [(Me₆tren)₂M^II₂(C₆H₄O₂²⁻)]²⁺ (Me₆tren = tris(2-dimethylaminoethyl)amine; M = Fe, Co, Ni) and their one-electron-oxidized, semiquinone-bridged analogues [(Me₆tren)₂M^II₂(C₆H₄O₂⁻˙)]³⁺. Single-crystal X-ray diffraction shows that the Me₆tren ligand restrains the metal centers in a trigonal bipyramidal geometry, and coordination of the bridging hydro- or semiquinone ligand results in a parallel alignment of the three-fold axes. We quantify the p-benzosemiquinone–transition metal magnetic exchange coupling for the first time and find that the nickel(ii) complex exhibits a substantial J < −600 cm⁻¹, resulting in a well-isolated S = 3/2 ground state even as high as 300 K. The iron and cobalt complexes feature metal–semiquinone exchange constants of J = −144(1) and −252(2) cm⁻¹, respectively, which are substantially larger in magnitude than those reported for related bis(bidentate) semiquinoid complexes. Finally, the semiquinone-bridged cobalt and nickel complexes exhibit field-induced slow magnetic relaxation, with relaxation barriers of U_eff = 22 and 46 cm⁻¹, respectively. Remarkably, the Orbach relaxation observed for the Ni complex is in stark contrast to the fast processes that dominate relaxation in related mononuclear Ni^II complexes, thus demonstrating that strong magnetic coupling can engender slow magnetic relaxation.

A semiquinone radical bridging two trigonal bipyramidal metal centers facilitates strong magnetic exchange and single-molecule magnet behavior.     

Determination of Methanol Increment in Mobile Phase Consisting of Methanol and Water by On—line UV Spectrometry in Reversed Phase Liquid Chromatography

ＩｎｔｒｏｄｕｃｔｉｏｎＦｒｏｎｔａｌｃｈｒｏｍａｔｏｇｒａｐｈｙ (ＦＣ) ,ａｎｏｌｄｂｒａｎｃｈｉｎｌｉｑｕｉｄｃｈｒｏｍａｔｏｇｒａｐｈｙ (ＬＣ) ,1ｈａｓｂｅｅｎｓｕｃｃｅｓｓｆｕｌｌｙｅｍ ｐｌｏｙｅｄｉｎｔｈｅｓｏｌｕｔｉｏｎｏｆｍａｎｙｔｈｅｏｒｅｔｉｃａｌａｓｗｅｌｌａｓａｐ ｐｌｉｅｄｐｒｏｂｌｅｍｓ—ｓｕｃｈａｓｍｅａｓｕｒｉｎｇｂｉｎｄｉｎｇｃｏｎｓｔａｎｔｂｅ ｔｗｅｅｎｃｏｍｐｏｎｅｎｔｓ2 ａｎｄｋｉｎｅｔｉｃｐａｒａｍｅｔｅｒｓｏｆｃｈｅｍｉｃａｌｒｅａｃｔｉｏｎｓ ,3 ａｄｓ…     

Proteomic analysis of carbonylated proteins in two-dimensional gel electrophoresis using avidin-fluorescein affinity staining

A method for detecting carbonylated proteins in two-dimensional electrophoresis (2-DE) was developed using biotinylation and avidin-fluorescein isothiocyanate (FITC) affinity staining. The method was used to examine oxidatively modified proteins associated with oxidative stress. Carbonyl formation in proteins was first examined in a model system by subjecting bovine serum albumin (BSA) and ribonuclease A (RNase A) to metal-catalyzed oxidation (MCO). Carbonyl group formation was found to occur at multiple sites along with a small amount of polypeptide chain cleavage. In vivo studies were conducted in yeast cell cultures using 5 mM hydrogen peroxide to induce oxidative stress. Biotinylation of yeast protein was accomplished during extraction at 4 degrees C in a lysis buffer containing 5 mM biotin-hydrazide. Biotin-hydrazide forms a Schiff base with a carbonyl group on an oxidized protein that is subsequently reduced before electrophoresis. Proteins were separated by either 2-DE or sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE). Biotinylated species were detected using avidin-FITC affinity staining. Detection sensitivity with biotinylated proteins was five times higher than achieved by silver staining. The limit of detection with avidin-FITC staining approached 0.64 pmol of protein-associated carbonyls. Twenty carbonylated proteins were identified in the proteome of yeast following oxidative stress with hydrogen peroxide. Matrix-assisted laser desorption/ionization-mass spectrometry (MALDI-MS) analysis of tryptic peptides was used to identify peptides extracted from gels. Aconitase, heat shock protein SSA1 and SSC1, pyruvate decarboxylase isozyme 1, pyruvate kinase 1, enolase 1 and 2, phosphoglycerate kinase, fructose-bisphosphate aldorase, and glyceraldehyde-3-phosphate dehydrogenase were among the major targets of oxidative stress.     

Top down characterization of larger proteins (45 kDa) by electron capture dissociation mass spectrometry.

The structural characterization of proteins expressed from the genome is a major problem in proteomics. The solution to this problem requires the separation of the protein of interest from a complex mixture, the identification of its DNA-predicted sequence, and the characterization of sequencing errors and posttranslational modifications. For this, the "top down" mass spectrometry (MS) approach, extended by the greatly increased protein fragmentation from electron capture dissociation (ECD), has been applied to characterize proteins involved in the biosynthesis of thiamin, Coenzyme A, and the hydroxylation of proline residues in proteins. With Fourier transform (FT) MS, electrospray ionization (ESI) of a complex mixture from an E. coli cell extract gave 102 accurate molecular weight values (2-30 kDa), but none corresponding to the predicted masses of the four desired enzymes for thiamin biosynthesis (GoxB, ThiS, ThiG, and ThiF). MS/MS of one ion species (representing approximately 1% of the mixture) identified it with the DNA-predicted sequence of ThiS, although the predicted and measured molecular weights were different. Further purification yielded a 2-component mixture whose ECD spectrum characterized both proteins simultaneously as ThiS and ThiG, showing an additional N-terminal Met on the 8 kDa ThiS and removal of an N-terminal Met and Ser from the 27 kDa ThiG. For a second system, the molecular weight of the 45 kDa phosphopantothenoylcysteine synthetase/decarboxylase (CoaBC), an enzyme involved in Coenzyme A biosynthesis, was 131 Da lower than that of the DNA prediction; the ECD spectrum showed that this is due to the removal of the N-terminal Met. For a third system, viral prolyl 4-hydroxylase (26 kDa), ECD showed that multiple molecular ions (+98, +178, etc.) are due to phosphate noncovalent adducts, and MS/MS pinpointed the overall mass discrepancy of 135 Da to removal of the initiation Met (131 Da) and to formation of disulfide bonds (2 x 2 Da) at C32-C49 and C143-C147, although 10 S-S positions were possible. In contrast, "bottom up" proteolysis characterization of the CoaBC and the P4H proteins was relatively unsuccessful. The addition of ECD substantially increases the capabilities of top down FTMS for the detailed structural characterization of large proteins.     

Highly efficient proteinase assay with chromogenic substrates and its application in a study of enzyme inhibitors

A simple and rapid method for the determination of enzyme activities with chromogenic substrates is described. Trypsin and papain were used as model proteinases and N-benzoyl-dl-arginine p-nitroanilide (BAPNA) was applied as substrate. The enzyme assay was performed on a multi-scale using 96-well microtitration plates and product release was detected with the aid of an automatic plate reader, widely used in ELISA tests. The procedure was used for electrophoretic studies of trypsin and a crude papain preparation. It was also applied for the investigation of N-peptidyl-O-acylhydroxylamine proteinase inhibitors. In comparison with commonly used procedures with chromogenic substrates, the proposed approach consumes markedly reduced amounts of all reagents. It allows an almost unlimited number of samples to be assayed in a short time and should be applicable to the detection and determination of any enzyme activitiy where chromogenic substrates are applicable.     

On the summations involving Wigner rotation matrix elements

Two new methods to evaluate the sums over magnetic quantum numbers, together with Wigner rotation matrix elements, are formulated. The first is the coupling method which makes use of the coupling of Wigner rotation matrix elements. This method gives rise to a closed form for any kind of summation that involves a product of two Wigner rotation matrix elements. The second method is the equivalent operator method, for which a closed form is also obtained and easily implemented on the computer. A few examples are presented, and possible extensions are indicated. The formulae obtained are useful for the study of the angular distribution of the photofragments of diatomic and symmetric-top molecules caused by electric-dipole, electric-quadrupole and two-photon radiative transitions. This revised version was published online in July 2006 with corrections to the Cover Date.     

Site-specific synthesis and reactivity of oligonucleotides containing stereochemically defined 1,N2-deoxyguanosine adducts of the lipid peroxidation product trans-4-hydroxynonenal

trans-4-Hydroxynonenal (HNE) is a major peroxidation product of omega-6 polyunsaturated fatty acids. The reaction of HNE with DNA gives four diastereomeric 1,N(2)-gamma-hydroxypropano adducts of deoxyguanosine; background levels of these adducts have been detected in animal tissue. Stereospecific syntheses of these four adducts at the nucleoside level have been accomplished. In addition, a versatile strategy for their site-specific incorporation into oligonucleotides has been developed. These adducts are destabilizing as measured by melting temperature when compared to an unadducted strand. The thermal destablization of the adducted 12-mers ranged from 5 to 16 degrees C and is dependent on the absolute stereochemistry of the adduct. The HNE adducts were also examined for their ability to form interstrand DNA-DNA cross-links when incorporated into a CpG sequence. We find that only one of the HNE stereoisomers formed interstrand DNA-DNA cross-links.     

A rapid cleanup method for the isolation and concentration of pyrrolizidine alkaloids in comfrey root

Preparations from comfrey (Symphytum officinale and S. x uplandicum) root and leaf contain varying levels of the hepatotoxic pyrrolizidine alkaloids (PAs). Reference compounds for comfrey are not commercially available, and there is currently no rapid extraction or analytical method capable of determining low levels in raw materials or as adulterants in commercially available extracts. A solid-phase extraction (SPE) method was developed using an Ergosil cleanup column that specifically binds the PAs. With this method, powdered comfrey root was extracted by sonication and shaking with basic chloroform. The extract was applied to the cleanup column under vacuum, washed with 2 mL acetone-chloroform (8 + 2, v/v) followed by 2 mL petroleum ether to remove excess chloroform. The column was dried under vacuum, and the PAs were eluted with 2 successive 1 mL aliquots methanol. Percent recoveries of the PAs following Ergosil SPE had an overall average of 96.8%, with RSD of 3.8% over a range of 1.0 to 25.0 g extracted in 100 mL. Average precision of the method (n = 3 over 4 extraction concentrations) gave an overall RSD of 6.0% for the 5 alkaloids, with a range of 0.8% (5 g in 100 mL) to 11.2% (25 g in 100 mL). Recovery optimization testing showed that 1.0 g comfrey root extracted in 100 mL yielded the greatest recovery (% dry weight) of the PAs, with an extraction efficiency and accuracy of 94.2%, and RSD of 1.7% (n = 9). The unique properties of the Ergosil cleanup column provide rapid sample cleanup, volume reduction, and concentration of PAs from comfrey extracts, and allow the eluant to be analyzed directly by traditional chromatographic methods.