Structure–property relationships of poly(vinyl alcohol). II. The influence of molecular regularity on the crystallization–dissolution temperature relationships of poly(vinyl alcohol)

Dissolution temperatures T_s have been determined for poly(vinyl alcohol) (PVA) samples of varying tacticity as a function of crystallization temperatures T_c. From the values of T_s and T_c, one can obtain values of (T_m)_∞, the dissolution temperature of crystals of infinite stepheight. (T_m)_∞ is a characteristic property of a given sample. This method of characterization is very sensitive and reliable for detecting differences in molecular regularity among PVA samples. The variation of (T_m)_∞ with stereoregularity is attributed in part to differences in hydrogen-bonding characteristics. Determinations of the crystallinities of solution-crystallized PVA have shown that stereoregularity in PVA does not result in higher crystallizability.     

Investigation of the early stages in soraphen A biosynthesis

The unusual benzoate starter unit in soraphen A derives from phenylalanine via cinnamate in a beta-oxidative (plant-like) pathway; 3-phenyl-3-hydroxypropanoate incorporates directly into soraphen by loading onto module 2 of the PKS and indirectly from the beta-oxidative pathway to generate benzoyl CoA.     

NMR determination of the conformation of a trimethylene interstrand cross-link in an oligodeoxynucleotide duplex containing a 5'-d(GpC) motif

Malondialdehyde interstrand cross-links in DNA show strong preference for 5'-d(CpG) sequences. The cross-links are unstable and a trimethylene cross-link has been used as a surrogate for structural studies. A previous structural study of the 5'-d(CpG) cross-link in the sequence 5'-d(AGGCGCCT), where G is the modified nucleotide, by NMR spectroscopy and molecular dynamics using a simulated annealing protocol showed the guanine residues and the tether lay approximately in a plane such that the trimethylene tether and probably the malondialdehyde tether, as well, could be accommodated without major disruptions of duplex structure [Dooley et al. J. Am Chem. Soc. 2001, 123, 1730-1739]. The trimethylene cross-link has now been studied in a GpC motif using the reverse sequence. The structure lacks the planarity seen with the 5'-d(CpG) sequence and is skewed about the trimethylene cross-link. Melting studies indicate that the trimethylene cross-link is thermodynamically less stable in the GpC motif than in the 5-d(CpG). Furthermore, lack of planarity of the GpC cross-link precludes making an isosteric replacement of the trimethylene tether by malondialdehyde. A similar argument can be used to explain the 5'-d(CpG) preference for interchain cross-linking by acrolein.     

Improved functional group compatibility in the palladium-catalyzed synthesis of aryl amines

[reaction: see text] The use of Pd2dba3 with bulky, electron-rich ligands 1 or 2 and LiN(TMS)2 as the base for the coupling of amines with aryl halides containing hydroxyl, amide, or enolizable keto groups is described. This protocol expands the utility of palladium-catalyzed C-N bond formation by allowing for the use of aryl halides containing these functional groups, obviating the need for protecting group manipulations.     

Interpretation of the optical dephasing time and lineshape function in the S0 → T1 exciton transitions of 1,4-dibromonaphthalene

The lineshape function for the S₀ → T₁ absorption in 1,4-dibromonaphthalene (DBN) is analyzed in terms of exchange theory. It is shown that the dominant optical dephasing mechanism for the electric dipole transition to the k = 0 state in the band results from the absorption and emission of a low energy optic phonon. This process dephases the optical absorption because of frequency differences of the phonon in the ground and excited state. In addition, it is shown how to extract the energy of the phonon responsible for dephasing, the phonon absorption rate, and the lifetime in the phonon promoted state from the data. The analysis of the data for DBN shows that very little dephasing of the optical transition occurs before ≈ 15 K but from 15 K to ≈ 40 K the singlet-triplet transitions to site I (20192 cm^?1) and site II (20245 cm^?1) are dephased by absorption and emission of an ≈ 38 cm^?1 and 45 cm^?1 phonon respectively. The phonon absorption rates by the k = 0 state in the exciton band are similar for both sites being 5 × 10⁶ s^?1 and 3 × 10⁵ s^?1 at 4 K and 7 × 10¹¹ s^?1 and 4 × 10¹¹ s^?1 at 30 K for site I and II respectively. Finally, the lifetimes in the phonon promoted state for sites I and II are 0.23 and 0.28 ps over the range 15–40 K.     

Electron spin resonance studies of propagating radicals in polymerization. I. Methacrylate propagating radicals

Ferric chloride-photosensitized free-radical initiation was used to generate propagating radicals in polymerization of methacrylic acid (MAA), allyl methacrylate (AMA), methyl methacrylate (MMA), 1,3-butylene dimethacrylate (1,3-BDMA), hydroxypropyl methacrylate (HPMA), lauryl methacrylate (LMA), hexyl methacrylate (HMA), and methacrylamide (MA) in rigid glasses of methanol or acetone at near liquid nitrogen temperatures. The formation and conformational changes of these propagating radicals at different temperatures were studied by electron spin resonance (ESR) spectroscopy. When methanol was the rigid glass, ·CH₂OH radicals were formed initially and were stable below ?160°C. As the temperature of the rigid glass was increased, the ·CH₂OH radicals reacted with monomer to yield propagating radicals. With the exception of the propagating radical for methacrylamide, the propagating radicals of the methacrylates examined initially generated five-line ESR spectra which gradually changed to nine-line spectra, as temperature of the rigid glass was increased. It was concluded that one type of propagating radical was formed in all cases. However, when the temperature of the rigid glass was increased, the single structural conformation that initially allowed one of the methylene hydrogens and methyl group to interact with the unpaired electron to generate only a five-line spectrum was changed to yield a second conformation that allowed interaction to generate an additional four-line spectrum. Finally, a mixture of the propagating radical for methacrylate monomer in two structural conformations was obtained, and an ESR spectrum consisting of nine lines (5 + 4 lines) was generated. In the case of the propagating radical for methacrylamide this change to yield two structural conformations evidently was hindered, so that only an ESR spectrum consisting of five lines was generated.     

Ultrafast UV pump/IR probe studies of C-H activation in linear,cyclic, and aryl hydrocarbons

The photochemical C-H activation reactions of eta(3)-TpRh(CO)(2) (Tp = HB-Pz(3), Pz = 3,5-dimethylpyrazolyl) and CpRh(CO)(2) (Cp = C(5)H(5)) have been studied in a series of linear, cyclic, and aromatic hydrocarbon solvents on a femtosecond to microsecond time scale. These results have revealed that the structure of the hydrocarbon substrate affects the final C-H bond activation step, which is in accordance with the known preference of bond activation toward primary C-H sites. In the case of aromatic C-H activation, the reaction is divided into parallel channels involving sigma- and pi-solvated intermediates. Results for the analogous CpRh(CO)(2) molecule have shown that the coordination of the cyclopentadienyl ligand does not play a direct role in the dynamics of the reaction, in contrast to the C-H activation mechanism observed in eta(3)-TpRh(CO)(2) studies.     

Mechanism of ligand exchange studied using transition path sampling

The mechanism of intermolecular ligand exchange has been studied using transition path sampling (TPS) based molecular dynamics (MD) simulations. Specifically, the exchange of solvent molecules bound to unsaturated Cr(CO)5 in methanol solution has been investigated. The results of the TPS simulations have shown that there are multiple steps in the reaction mechanism. The first involves partial dissociation of the coordinated solvent from the Cr metal center followed by association with a new methanol molecule between the normally void first and second solvent layers. After diffusive motion of the exchanging ligands, the last step involves the originally bound methanol molecule moving into the bath continuum followed by solvation of the Cr metal fragment by the exchanging ligand. It has been found that the reaction center (defined as the organometallic fragment and two exchanging ligands only) and the solvent bath have favorable interactions. This is likely due to the adiabatic nature of the ligand exchange transition. The ability to understand the microscopic molecular dynamics of a chemical process based on a free energy analysis is also discussed.     

Time-resolved measurements of the photolysis and recombination of adenosylcobalamin bound to glutamate mutase

Femtosecond to nanosecond transient absorption spectroscopy is used to investigate the photolysis of 5'-deoxyadenosylcobalamin (coenzyme B12, AdoCbl) bound to glutamate mutase. The photochemistry of AdoCbl is found to be inherently dependent upon the environment of the cofactor. Excitation of AdoCbl bound to glutamate mutase results in formation of a metal-to-ligand charge transfer intermediate state which decays to form cob(II)alamin with a time constant of 105 ps. This observation is in contrast to earlier measurements in water where the photohomolysis proceeds through an intermediate state in which the axial dimethylbenzimidazole ligand appears to have dissociated, and measurements in ethylene glycol where prompt bond homolysis is observed (Yoder, L. M.; Cole, A. G.; Walker, L. A., II; Sension, R. J. J. Phys. Chem. B 2001, 105, 12180-12188). The quantum yield for formation of stable radical pairs in the enzyme is found to be phi = 0.05 +/- 0.03, and the resulting intrinsic rate constants for geminate recombination and "cage escape" are 1.0 +/- 0.1 and 0.05 +/- 0.03 ns(-1), respectively. The rate constant for geminate recombination is 30% less than that observed for AdoCbl in water or ethylene glycol. This reduction is insufficient to account for the 10(12)-fold increase in the homolysis rate observed when substrate is bound to the protein. Finally, the protein provides a cage to prevent diffusive loss of the adenosyl radical; however, the ultimate yield for long-lived radicals is determined by the evolution from a singlet to a triplet radical pair as proposed for AdoCbl in ethylene glycol.     

Investigation of the relative stability of positive alkali halide cluster ions generated by fast atom bombardment

The stabilities of alkali halide cluster ions [M(MX)_n]⁺ (M ? Li, Na, K, Rb, Cs; X ? F, Cl, Br, I) have been studied by measuring the fragment ion yields following dissociation of the ions in the second field free region of a ZAB-2F mass spectrometer. Extractable cluster ions were observed for certain values of n. It was found that the stabilities of the neutral fragment species formed are also of importance in determining the fragmentation rates. Possible configurations of M and X in the stable ions are discussed.