Proteomic profiling of pancreatic ductal carcinoma cell lines treated with trichostatin-A

A pancreatic adenocarcinoma cell line (Paca44) was treated with trichostatin-A (TSA), a potent inhibitor of histone deacetylases, in order to evaluate the effect of this drug on protein expression. Master maps of control and treated Paca44 cells were generated by analysis with the PDQuest software. The comparison between such maps showed up- and downregulation of 51 polypeptide chains, out of a total of 700 spots detected by a medium-sensitivity stain, micellar Coomassie Brilliant Blue. Fingerprinting by matrix-assisted laser desorption/ionization-time of flight (MALDI-TOF)-mass spectrometry analysis enabled the identification of 22 of these spots. Among these proteins, of particular interest are the two downregulated proteins nucleophosmin and translationally controlled tumor protein, as well as the upregulated proteins programmed cell death protein 5 (also designated as TFAR19) and stathmin (oncoprotein 18). The modulation of these four proteins is consistent with our observation that TSA is able to inhibit cell growth of Paca44 by causing cell cycle arrest at the G2 phase and apoptotic cell death.     

Two-dimensional gel electrophoresis/matrix-assisted laser desorption/ionisation mass spectrometry of commercial bovine milk

Proteins in commercial bovine milk have been separated by two-dimensional gel electrophoresis and examined by matrix-assisted laser desorption/ionisation mass spectrometry. Gel separation was conducted in two different pH gradients, 3-10 and 6-11; the latter range resulted in a higher spot resolution and favoured the basic proteins. We have limited the time-of-flight mass spectrometry analysis to the linear mode to examine the capability of reliable relative molecular masses of the intact proteins in their characterisation. The present study draws attention to the difficulty of identifying basic proteins with low molecular masses (below 12000 Da) that are commonly encountered in milk samples.     

Biphasic epoxidation of 1-octene with H2O2 catalyzed by amphiphilic fluorinated Ti-loaded zirconia

A series of amphiphilic fluorinated zirconia containing titanium was prepared by titanium impregnation followed by fluorination and alkylsilylation of zirconium oxide. Physical properties of the resulting samples were characterized by XRD analysis, UV-vis spectroscopy, BET surface area analysis and EDAX analysis. The effects of fluorine and alkylsilane groups on the samples were studied by the epoxidation of 1-octene with aqueous hydrogen peroxide. The epoxidation of alkenes is one of the most important methods of functionalizing simple hydrocarbons. The amphiphilic fluorinated catalysts were more active and more efficient than the conventional titania-silica and zirconia-silica mixed oxides in linear alkene epoxidation; enhanced by the presence of alkylsilane and fluorine groups in the catalysts. Modification with alkylsilane successfully induces the hydrophobic behavior of zirconia which is hydrophilic in nature; whereas fluorine was chosen for its electron-withdrawing effect which further activates the titanium active sites.     

Kinetic and analytical study on precipitation reactions with110AgNO3 of some di (β-chloroethyl) amine derivates and hydrochlorides with esters of N-(p-aminobenzoyl)-L-aspartic acid as carriers from dimethylformamide-water solution

The kinetics of precipitation reactions with¹¹⁰AgNO₃ of some di (β-chlorethyl) amine derivates and hydrochlorides with esters of N-(p-aminobenzoyl)-L-aspartic acid as carriers in dimethylformamide-water mixture, were studied. The rate constants of these reactions were of the order of 10^?4 1 · mol^?1 · min^?1. The concentrations of the corresponding hydrochloride solutions were measured by radiometric titration with¹¹⁰AgNO₃ solution of given concentration.     

ASSOCIATION PHENOMENON OF A MIXED CATIONIC SURFACTANT IN NON-AQUEOUS SYSTEM

Pseudoternary phase diagrams of a mixture of two cationic surfactants, hexan-1-ol and a third component consisting of glycerol, formamide, water/glycerol or water/formamide were obtained. These diagrams were then contrasted with its water counterpart.

The results showed that the association phenomenon were entirely different from that of the corresponding water system. The lamellar liquid crystalline region was absent in both of the glycerol or formamide systems. This indicated a less ordered or destabilizing effect in the association structure resulting in the replacement water with that of glycerol or formamide. The presence of formamide resulted in a more destabilizing effect compared to the glycerol. This was shown by the smaller lamellar liquid crystal region obtained in the pseudoternary phase diagram containing equal weight ratio of water and formamide.     

Application of matrix-assisted laser desorption/ionization to on-line aerosol time-of-flight mass spectrometry

Matrix-assisted laser desorption/ionization (MALDI) mass spectra were obtained from single biological aerosol particles using an aerosol time-of-flight mass spectrometer (ATOFMS). The inlet to the ATOFMS was coupled with an evaporation/condensation flow cell that allowed the aerosol to be coated with matrix material as the sampled stream entered the spectrometer. Mass spectra were generated from aerosol composed either of gramicidin-S or erythromycin, two small biological molecules, or from aerosolised spores of Bacillus subtilis var niger. Three different matrices were used: 3-nitrobenzyl alcohol, picolinic acid and sinapinic acid. A spectrum of gramicidin-S was generated from approximately 250 attomoles of material using a molar ratio of 3-nitrobenzyl alcohol to analyte of approximately 20:1. A single peak, located at 1224 Da, was obtained from the bacterial spores. The washing liquid and extract solution from the spores were analyzed using electrospray mass spectrometry and subsequent MS/MS product ion experiments. This independent analysis suggests that the measured species represents part of the B. subtilis peptidoglycan. The on-line addition of matrix allows quasi-real-time chemical analysis of individual, aerodynamically sized particles, with an overall system residence time of less than 5 seconds. These results suggest that a MALDI-ATOFMS can provide nearly real-time identification of biological aerosols. Copyright 2000 John Wiley & Sons, Ltd.     

Protein alkylation by acrylamide, its N-substituted derivatives and cross-linkers and its relevance to proteomics: a matrix assisted laser desorption/ionization-time of flight-mass spectrometry study.

The present review highlights some important alkylation pathways of proteins, as measured by matrix assisted laser desorption/ionization-time of flight (MALDI-TOF)-mass spectrometric analysis, engendered by acrylamide and a number of its derivatives, including N-substituted acrylamides, cross-linkers and Immobilines (the acrylamido weak acids and bases used to create immobilized pH gradients). The present data are of relevance in two-dimensional maps and proteome analysis. It is shown that acrylamide can alkylate the -SH group of proteins even when engaged in disulfide bridges. An order of reactivity is obtained for a series of cross-linkers, which are shown to have an extremely reacting double bond, with the second one almost unreactive, originating "pendant, unreacted ends", which can subtract proteins migrating in a gel by covalently affixing them to it. An analogous reactivity scale is constructed also for the Immobiline chemicals, whose reactivity is shown to be linearly dependent on the pK values, the least reacting species being the acidic compounds. When analyzing real-life samples by two-dimensional (2-D) maps, like milk powders, a number of modifications can be detected by MALDI-TOF mass spectra of eluted spots, including variable phosphorylation sites (up to nine) and lactosyl moieties. If, for eluting such spots, formic acid is used, MALDI-TOF mass spectrometry (MS) reveals an incredible number of formylation sites, on Ser and Thr residues.