Elucidating the mechanisms of the molecular sieving phenomenon created by comb-shaped polymers grafted to a protein – a simulation study

Advances in polymer chemistry now allow the creation of protein–polymer conjugates of great complexity. These advances equally enable the fine-tuning of their structure (and hence properties) to address specific challenges they face as therapeutics. Some of these challenges faced by non-human proteins include their rapid degradation, elimination or immunogenicity in vivo, and one of the most recognized solutions for this is to mask their surface with chains of linear poly(ethylene glycol). This, however, generally reduces bioactivity. Several experimental studies have shown that switching from linear to architecturally complex polymers (comb-shaped, branched, dendronized) partially resolves this issue for a subset of proteins whose bioactivity involves small molecules, by creating a “molecular sieving” effect. The mechanisms underlying molecular sieving, however, have never been entirely elucidated. This study presents a coarse-grained model of α-chymotrypsin modified with multiple chains of the comb-shaped polymer poly(oligo(ethylene glycol) methyl ether methacrylate) to study molecular sieving. Results demonstrate the steric nature of the phenomenon (i.e., creation of gaps in the polymer coating), though steric considerations alone could not reconcile all of the experimental trends. The simulations rather suggest that these gaps enable the selective accumulation of small (substrate) molecules near the surface of the protein (in a favourable microenvironment created by the polymer), which exacerbates the “molecular sieving” phenomenon (i.e., difference in the ability of small vs. large substrates to reach the protein).     

Temperature and concentration dependence of diffusion coefficients in ethylene–propylene-diene copolymers

Self-diffusion and partition coefficients were measured for two commercial ethylene–propylene-diene copolymers (EPDM) and five solvents at infinite dilution using inverse gas chromatography. Mutual diffusion coefficients for solvents in EPDM also were measured for finite concentration using gravimetric sorption for three of the solvents. From the inverse gas chromatography experimental values for self-diffusion coefficients were obtained. Free-volume parameters were obtained through regression of the self-diffusion coefficient as a function of temperature. Mutual diffusion coefficients as a function of concentration were predicted using free volume theory and compared with experimental data obtained using gravimetric sorption. © 1998 John Wiley & Sons, Inc. J Polym Sci B: Polym Phys 36: 1713–1719, 1998     

Stable isotopic studies of earthworm feeding ecology in tropical ecosystems of Puerto Rico

Feeding strategies of earthworms and their influence on soil processes are often inferred from morphological, behavioral and physiological traits. We used (13)C and (15)N natural abundance in earthworms, soils and plants to explore patterns of resource utilization by different species of earthworms in three tropical ecosystems in Puerto Rico. In a high altitude dwarf forest, native earthworms Trigaster longissimus and Estherella sp. showed less (15)N enrichment ((15)N = 3-6 per thousand) than exotic Pontoscolex corethrurus ((15)N =7-9 per thousand) indicating different food sources or stronger isotopic discrimination by the latter. Conversely, in a lower altitude tabonuco forest, Estherella sp. and P. corethrurus overlapped completely in (15)N enrichment ((15)N = 6-9 per thousand), suggesting the potential for interspecific competition for N resources. A tabonuco forest converted to pasture contained only P. corethrurus which were less enriched in (15)N than those in the forest sites, but more highly enriched in (13)C suggesting assimilation of C from the predominant C(4) grass. These results support the utility of stable isotopes to delineate resource partitioning and potential competitive interactions among earthworm species. Copyright 1999 John Wiley & Sons, Ltd.     

Influence of electron beam irradiation on the impact properties of polystyrene/EPDM rubber blends

The influence of electron beam (EB) irradiation on the impact properties of compatibilized polystyrene/ethylene-propylene-diene-monomer (PS/EPDM) blends was studied. The change in impact value upon irradiation proved to be strongly dependent on the type of compatibilizer used. Using a polystyrene/polybutadiene (SB) diblock copolymer as a compatibilizer, a twofold increase in Izod value could be achieved upon irradiation. Irradiation of a blend using a polystyrene/ethylene-propylene (SEP) copolymer as a compatibilizer resulted in a decrease in impact strength. These observations can be related to a radiation induced increase in interfacial adhesion in case of the SB copolymer, which does not occur for the SEP copolymer. Due to the abundance of double bonds in the SB copolymer, this copolymer reacts very fast upon irradiation and may co-crosslink with, or graft onto the EPDM phase. For the SEP copolymer crosslinking occurs only at much higher doses and is (partly) overruled by chain scission and consequently the adhesion between matrix and dispersed phase will hardly change. This view is supported by analytical methods as FT-IR and NMR as well as from T_g measurements.     

HPAEC‐PAD method for the analysis of alkaline hydrolyzates of Haemophilus influenzae type b capsular polysaccharide

A gradient method has been devised for the rapid analysis of alkaline hydrolyzates of Haemophilus influenzae type b (Hib) capsular polysaccharide‐based vaccines by high‐performance anion exchange chromatography with pulsed amperometric detection (HPAEC‐PAD). As compared with published procedures, peak shape and sensitivity were significantly improved with this approach, analysis time was short and there was little interference from impurities. The limits of detection and quantification were established with a purified reference polysaccharide. We propose this method as a practical alternative for the analysis of minute amounts of Hib polysaccharide, which can be lower than with the conventional approaches. Copyright © 2013 John Wiley & Sons, Ltd.     

Physical properties of 3-methyl-N-butylpyridinium tricyanomethanide and ternary LLE data with an aromatic and an aliphatic hydrocarbon at T = (303.2 and 328.2) K and p = 0.1 MPa

Several physical properties were determined for the ionic liquid 3-methyl-N-butylpyridinium tricyanomethanide ([3-mebupy]C(CN)₃): liquid density, viscosity, surface tension, thermal stability and heat capacity in the temperature range from (283.2 to 363.2) K and at 0.1 MPa. The density and the surface tension could well be correlated with linear equations and the viscosity with a Vogel-Fulcher-Tamman equation. The IL is stable up to a temperature of 420 K.Ternary data for the systems {benzene + n-hexane, toluene + n-heptane, and p-xylene + n-octane + [3-mebupy]C(CN)₃} were determined at T = (303.2 and 328.2) K and p = 0.1 MPa. All experimental data were well correlated with the NRTL model. The experimental and calculated aromatic/aliphatic selectivities are in good agreement with each other.     

Binary and ternary (liquid + liquid) equilibrium for {methylcyclohexane (1) + toluene (2) + 1-hexyl-3-methylimidazolium tetracyanoborate (3)/1-butyl-3-methylimidazolium tetracyanoborate (3)}

This paper focuses on the study of the solubility behaviour of 1-hexyl-3-methylimidazolium tetracyanoborate [HMIM][TCB] and 1-butyl-3-methylimidazolium tetracyanoborate [BMIM][TCB] in combination with methylcyclohexane and toluene as representatives for non-aromatic and aromatic components. Binary and ternary (liquid + liquid) equilibrium data were collected at three different temperatures and at atmospheric pressure (0.1 MPa). The experimental data were well-correlated with the NRTL and UNIQUAC thermodynamic models; however, the UNIQUAC model gave better predictions than the NRTL, with a root mean square error below 0.97%. The non-aromatic/aromatic selectivities of the ionic liquids make them suitable solvents to be used in extractive distillation processes.     

Ionic liquids as silica deactivating agents in gas chromatography for direct analysis of primary amines in water

Analysis of primary amines in aqueous samples remains a challenging analytical issue. The preferred approach by gas chromatography is hampered by interactions of free silanol groups with the highly reactive amine groups, resulting in inconsistent measurements. Here, we report a method for direct analysis of aliphatic amines and diamines in aqueous samples by gas chromatography (GC) with silanol deactivation using ionic liquids (ILs). ILs including trihexyl(tetradecyl)phosphonium bis 2,4,4-(trimethylpentyl)phosphinate (Cyphos IL-104), 1-methyl-3-propylimidazolium bis(trifluoromethylsulfonyl)imide [pmim][Tf(2)N] and N″-ethyl-N,N,N',N'-tetramethylguanidinium tris(pentafluoroethyl)trifluorophosphate [etmg][FAP] were tested as deactivating media for the GC liner. Solutions of these ILs in methanol were injected in the system prior to the analysis of primary amines. Butane-1,4-diamine (putrescine, BDA) was used as a reference amine. The best results were obtained using the imidazolium IL [pmim][Tf(2)N]. With this deactivator, excellent reproducibility of the analysis was achieved, and the detection limit of BDA was as low as 1mM. The applicability of the method was proven for the analysis of two different primary amines (C4-C5) and pentane-1,5-diamine.