Protein posttranslational modifications: the chemistry of proteome diversifications

The diversity of distinct covalent forms of proteins (the proteome) greatly exceeds the number of proteins predicted by DNA coding capacities owing to directed posttranslational modifications. Enzymes dedicated to such protein modifications include 500 human protein kinases, 150 protein phosphatases, and 500 proteases. The major types of protein covalent modifications, such as phosphorylation, acetylation, glycosylation, methylation, and ubiquitylation, can be classified according to the type of amino acid side chain modified, the category of the modifying enzyme, and the extent of reversibility. Chemical events such as protein splicing, green fluorescent protein maturation, and proteasome autoactivations also represent posttranslational modifications. An understanding of the scope and pattern of the many posttranslational modifications in eukaryotic cells provides insight into the function and dynamics of proteome compositions.     

A unique mechanism for base catalyzed hydrolysis of pentaaminecobalt(III) complexes containing picolyl residues

A novel [Co(pentaamine)Cl](2+) complex having all tertiary amine or pyridine donors has been synthesized (pentaamine = 1,4-bis(2'-pyridyl)-7-methyl-1,4,7-triazacyclononane). This asym-[Co(dmpmetacn)Cl](2+) species has been completely characterized through 1D and 2D NMR studies, and through the X-ray structure for the ZnCl(4)(2)(-) salt. Despite the lack of an activating NH center, remarkably its hydrolysis to [Co(pentaamine)OH](2+) is base catalyzed (k(OH) 0.70 M(-)(1) s(-)(1), 25 degrees C, I = 1.0 M, NaCl). Detailed NMR studies reveal that the base catalyzed substitution leads to the exchange of just one deuterium in one of the two -CH(2)- pyridyl arms, that is approximately trans to the leaving group, and this occurs during and not after base hydrolysis. Quenching experiments for the reaction of asym-[Co(dmpmetacn)Cl](2+) and control experiments on H/D exchange for the product asym-[Co(dmpmetacn)OD](2+) in OD(-) show that each act of deprotonation at the acidic methylene leads to loss of Cl(-). This is the first established case of base catalyzed substitution for a complex where the effective site of deprotonation is at a pyridyl group. A pronounced kinetic isotope effect is observed for the species perdeuterated at the pyridyl methylenes (k(H)/k(D) = 5.0), consistent with rate limiting deprotonation which is a rare event in Co(III) substitution chemistry. The activation afforded by the carbanion is discussed in terms of a new process coined the pseudo-aminate mechanism.     

Synthesis,structure, and reactions of a three-coordinate nickel-carbene complex, [1,2-Bis(di-tert-butylphosphino)ethane]Ni=CPh(2)

The three-coordinate nickel-carbene complex (dtbpe)Ni=CPh2 (3) was prepared from the thermolysis of the diphenyldiazoalkane complex (dtbpe)Ni(N,N':eta2-N2CPh2) (2) (dtbpe = 1,2-bis(di-tert-butylphosphino)ethane). Complex 3 was structurally characterized by single-crystal X-ray diffraction methods (Ni-C = 1.836(2) A). Complex 3 reacts with 2 equiv of CO2 to afford (dtbpe)Ni{OC(O)CPh2C(O)O} (4), with diphenylketene to give (dtbpe)Ni{OC(=CPh2)CPh2} (5), with excess CO to transfer the carbene fragment and generate diphenylketene and (dtbpe)Ni(CO)2 (6), with sulfur dioxide to give the metallasulfone (dtbpe)Ni{C,S:eta2-S(O)2CPh2} (7), and with the Br?nsted acid [HNMe2Ph][B(C6F5)4] to give the alkyl cation [(dtbpe)Ni(CHPh2)][B(C6F5)4] (8). Complexes 4, 5, and 7 have also been characterized by single-crystal X-ray diffraction methods.     

Ab initio rotation-vibration spectra of HCN and HNC

We have calculated an ab initio HCN/HNC linelist for all transitions up to J= 25 and 18000 cm(-1) above the zero point energy. This linelist contains more than 200 million lines each with frequencies and transition dipoles. The linelist has been calculated using our semi-global HCN/HNC VQZANO + PES and dipole moment surface, which were reported in van Mourik et al. (J. Chem. Phys. 115 (2001) 3706). With this linelist we synthesise absorption spectra of HCN and HNC at 298 K and we present the band centre and band transition dipoles for the bands which are major features in these spectra. Several of the HCN bands and many of the HNC bands have not been previously studied. Our line intensities reproduce via fully ab initio methods the unusual intensity structure of the HCN CN stretch fundamental (00(0)1) for the first time and also the forbidden (02(2)0) HCN bending overtone. We also compare the J = 1-->0 pure rotational transition dipole in the HCN/HNC ground and vibrationally excited states with experimental and existing ab initio results.     

Reactions of alkynes with bis(triphenylphosphine)platinum-ethylene: A 31P-{1H} NMR study

Internally consistent assignments of the ³¹P-{¹H} NMR parameters of the complexes [Pt(RCCR′)(PPh₃)₂] are proposed, based on the premise that the magnitude of ¹J(PtP) depends mainly on the nature of the moiety CR trans to P. For a given R, ²J(PP) correlates with ¹J(PtP) for thebond trans to CR. The alkynes PhCCSnEt₃, PhCCSnPh₃, Me₃SiCCCl, Me₃SiCCBr, Et₃SiCCI and MeCCI undergo oxidative addition reactions with [Pt(C₂H₄)(PPh₃)₂]; the intermediate alkyne complex was detected for PhCCSnEt₃, Me₃SiCCCl and Me₃CCBr. The triyne Me(CC)₃Me forms platinum(0) complexes by coordination with the central or terminal CC bond and appears also to give a platinum(II) complex by oxidative addition.     

Molecular mechanics (MM2) calculations and cone angles of phosphine ligands

Molecular mechanics (MM2) calculations were performed on 54 conformations of 18 phosphines (PH₃; PH_3−nR_n, where n = 1,…3, and R = Me and Et, n = 1 or 2 and R =ⁱPr, and n = 1 and R =^tBu, PMe₂Et, PMeEt₂, and PPhMe₂, and PPh₂R where R = Me, Et, ⁱPr, ^tBu and Ph). The results are compared to those previously obtained from MINDO/3 and MNDO calculations, and to experimental data. Single conformer cone angles and weighted average cone angles were calculated from MM2 optimized geometries employing Tolman's general definition, and they are compared to Tolman's values, MINDO/3 results, and T.L. Brown's E_R values. Of the cone angle definitions used, the weighted average values are suggested as the best single representation of phosphine ligand sizes. The steric parameters (cone angle and E_R values) alone, and in conjunction with electronic parameters, are correlated with experimental data.     

Approximation of rectangular sums of B-valued random variables

Summary Given independent identically distributed random variables {x _n ;n ^q | indexed by q-tuples of positive integers and taking values in a separable Banach space B we approximate the rectangular sums by a Brownian sheet. We obtain the corresponding result for random variables with values in a separable Hilbert space H while assuming an optimal moment condition. Generalized versions of the functional law of the iterated logarithm are thus derived.     

Polarization of coherent synchrotron radiation from an electron beam rotating in a plasma

After eliminating reflections from the walls of the plasma container, we observed polarization of the coherent synchrotron radiation from a relativistic electron beam rotating in a plasma. Several features of the polarization agree well with calculations based on the single particle synchrotron radiation theory. A particular polarization ratio (Fig. 3) does not, however. We deduce from this direct diffraction of the radiation by the beam electrons. This is strong evidence for beam-particle bunches of size cm. Also, there must be some absorption of the extraordinary wave to account for the observations. We suggest a way to apply these results to measure the pitch angle of the beam.Work supported by Army Research Office.     

Synthesis and molecular structure of the optically active organoaluminium dimer (S)-(—)-(S)-(—)- [(C6H5)CH(CH3)NHA1(CH3)2]2

Reaction of the optically active primary amine (S)-(—)--methylbenzylamine with trimethylaluminium in heptane affords the crystalline organoaluminium dimer (S)-(—)-(S)-(—)-[(C₆H₅)CH(CH₃)NHA1(CH₃)₂]₂. Isolated as large, colourless, extremely air-sensitive prismatic crystals, the title compound crystallizes in the orthorhombic space group P2₁2₁2₁ with unit cell parameters a = 8.406(3), b = 15.505(4), c = 17.547(5) Å, V = 2287 ų and p = 1.03 g cm⁻³ for Z = 4. Least-squares refinement based on 1477 observed reflections converged at R = 0.056, R_w = 0.058. Methane was eliminated during the course of the reaction due to cleavage of A1---C and N---H bonds resulting in an asymmetric A1₂N₂ fragment at the core of the organoaluminium dimer. The mean A1---C bond distance in the dimethylaluminium units is 1.930(8), while the mean A1---N bond distance is 1.950(5) Å. Specific rotation ([]_D²⁵ in CH₂C1₂)of the dimer is determined to be - 20.6°.