Surface States in a Simple Crystal Model

A very simple crystal model of a semi-infinite heteroatomic planar lattice like boronitride is investigated for the energy, wave functions and existence conditions of surface states, using the one-electron Green function method. σ and π electrons are treated separately. For π electrons, we find two surface state bands, both for the electropositive and the electronegative surface. The consequence is the existence of Shockley “subsurface” states. For σ electrons, similar results were found as for the sphalerite-type lattice. The investigated model can also be used to draw qualitative conclusions about the effect of electronic correlation on surface states of planar graphite. The possibility of finding a certain type of “antiferromagnetism” with π electrons localized on the planar graphite boundary is suggested. On étudie un modèle très simple d'un cristal avec un réseau sémi-infini, héteroatomique, comme le boronitride. L'énergie, les fonctions d'onde et des conditions d'existence d'états de surface ont été obtenus par la méthode de la fonction de Green à un électron. Les électrons σ et π ont été traités séparément. Pour les électrons π on trouve deux bandes d'états de surface pour la surface électropositive ainsi que pour la surface électronégative, ce qui implique l'existence d'états de “sous-surface” de Shockley. Pour les électrons σ on trouve des résultats semblables aux ceux qu'on a obtenu pour le réseau de type sphalérite. Le modèle étudié ici peut aussi être employé pour tirer des conclusions qualitatives sur l'effet de la corrélation électronique sur les états de surface du graphite plan. On propose qu'il serait possible de trouver un certain type de “antiferromagnétisme” avec les électrons π localisés sur le bord du graphite plan. Es wurde ein einfaches Modell für ein halb-unendliches, heteroatomares Kristallgitter, wie Boronitrid untersucht. Die Energie, die Wellenfunktionen und Existenzbedingungen für Oberflächenzustände wurden mit der Einelektron-Green-Funktionsmethode erhalten. Die σ- und π-Electronen wurden getrennt behandelt. Für die π-Elektronen finden wir zwei Bände für Oberflächenzustände, sowohl für die elektropositive als für die elektronegative Oberfläche. Als Folgerung erhalten wir die Shockleysche unteroberflächenzustände. Für die σ-Elektronen wurden ähnliche Resultate als für das Sphaleritgitter gefunden. Das untersuchte Modell kann auch dafür angewendet werden, urn den Effekt der elektronischen Korrelation auf die Oberflächenzustände planares Graphits in qualitativer Weise zu diskutieren. Es wurde vorgeschlagen, dass es möglich wäre, eine gewisse Art von “Antiferromagnetismus” der π-Elektronen die auf der Grenze planares Graphits lokalisiert sind, zu finden.     

Molecular vibrations and lattice dynamics of ortho-terphenyl

Infrared and Raman spectra of crystalline, melted and solvated ortho-terphenyl and its perdeuterated isotopomer, D₁₄-ortho-tephenyl, have been recorded. Optimized geometries and vibrational frequencies were calculated by the semiempirical RHF/AM1 method and by DFT using the B3LYP functional and 6–31G(d) basis set. In both cases the lowest energy conformation is of C₂ symmetry. With the scaled AM1 and B3LYP/6-31G(d) force fields the average error in reproducing the experimental molecular vibrational frequencies is 13cm^?1 and 5cm^?1, respectively. The AM1 potential energy surface for phenyl torsions was mapped on a 15° grid. The barrier to concerted internal rotation is estimated to lie between 3 kJ mol^?1 and 6kJ mol^?1. The calculations of the lattice dynamics at k = 0 in the low temperature fully ordered crystal phase of parent and deuterated ortho-terphenyl were performed with inclusion of six low lying intramolecular vibrations. The conformational change of the ortho-terphenyl molecule induced by crystal packing forces was taken into account by re-defining the unperturbed molecular vibrational state. Although an accurate assignment of lattice vibrations was not possible, the calculated spectra give quite a reasonable picture of the low frequency dynamics in crystalline ortho-terphenyl. The relevance of the results obtained to the glass forming property of ortho-terphenyl is discussed.     

Computation of some thermodynamics, transport, structural properties, and new equation of state for fluid neon using a new intermolecular potential from molecular dynamics simulation

A new pair potential energy function of neon has been determined via the inversion of reduced viscosity collision integrals at zero pressure and fitted to obtain an analytical potential form. The pair potential reproduces the second virial coefficient, viscosity, thermal conductivity, and self-diffusion coefficient of neon in a good accordance with experimental data over wide ranges of temperature and density. We have also performed molecular dynamics simulation to obtain some thermodynamics, transport, and structural properties of fluid neon at different temperatures and densities using our calculated pair potential supplemented by quantum corrections following the Feynman–Hibbs approach. The significance of this work is that the three-body expression of Wang and Sadus (J Chem Phys 125:144509–1, 2006) can be used to improve the prediction of the pressures of neon without requiring an expensive three-body calculation. The molecular dynamics simulation of neon has been also used to determine a new equation of state for neon. Our results are in a good agreement with experiment and literature values.     

Computation of some thermodynamic properties of helium–neon and helium–krypton fluid mixtures using molecular dynamics simulation

We have performed molecular dynamics simulations to obtain internal energy and pressure of helium–neon and helium–krypton mixtures at different densities using accurate recently two-body ab initio potentials supplemented by quantum corrections following the Feynman–Hibbs approach. The significance of this work is that the three-body expression of Wang and Sadus [22] was used to improve prediction of the pressures and internal energies of helium + krypton and helium + neon mixtures without requiring an expensive three-body calculation. Our results show a good agreement with the corresponding experimental data.     

Parity conservation and the Euclidean field formulation of relativistic quantum field theories

A method to construct Euclidean covariant fields corresponding to a relativistic quantum field theory with arbitrary spins is presented. The constructed fields act on a state space with an indefinite inner product, they commute (or anticommute) totally and (except for hermitian Fermion fields) adjoint relativistic fields correspond to adjoint Euclidean fields. The cases where this method can be applied include all Gårding-Wightman theories invariant under space inversion.     

Synthesis and molecular docking study of novel COVID-19 inhibitors

In 2020, the world tried to combat the corona virus (COVID-19) pandemic. A proven treatment method specific to Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2) is still not found. In this study, seven new antiviral compounds were designed for COVID-19 treatment. The ability of these compounds to inhibit COVID-19’s RNA processing was calculated by the molecular docking study. It has been observed that the compounds can have high binding affinities especially against NSP12 (between -9.06 and -8.00 kcal/mol). The molecular dynamics simulation of NSP12-ZG 7 complex proved the stability of interaction. The synthesis of two most active molecules was performed by one-pot reaction and characterized by FT-IR, ¹H-NMR, ¹³C-NMR, and mass spectroscopy. The compounds presented with their synthesis are inhibitory core structures against SARS-CoV-2 infection.     

Computation of some thermodynamic properties of nitrogen using a new intermolecular potential from molecular dynamics simulation

A new pair-potential energy function of nitrogen has been determined via the inversion of reduced viscosity collision integrals and fitted to obtain an analytical potential form. The pair-potential reproduces the second virial coefficient, viscosity, thermal conductivity, self-diffusion coefficient, and thermal diffusion factor of nitrogen in a good accordance with experimental data over wide ranges of temperatures and densities. We have also performed the molecular dynamics simulation to obtain pressure, internal energy, heat capacity at constant volume, and self-diffusion coefficient of nitrogen at different temperatures and densities using our calculated pair-potential and some other potentials. The molecular dynamics of the nitrogen molecules has been also used to determine nitrogen equation of state in two (low and high) pressure ranges. Our results are in a good agreement with experiment and literature values.     

Glycerol revisited molecular dynamic simulations of structural,dynamical, and thermodynamic properties

We performed molecular dynamics simulations to investigate the properties of glycerol for a wide range of temperatures at standard pressure. We calculated structural (radial distribution functions and pair potential of mean force), dynamical (mean square displacement and transport properties), and thermodynamic (density, thermal expansion, and Hildebrand solubility parameter) properties of glycerol. The results of structural properties showed that the correlation between glycerol atoms weakens as temperature increases. The values of mean square displacement showed that changing temperature has a strong influence on mobility of glycerol atoms. The values of diffusion coefficient and viscosity are remarkably close to the experimental values over the whole range of temperatures studied. The simulation results provide a reasonable estimation of density with percent error of 0.40 %. The simulated values of Hildebrand solubility parameter of glycerol decrease with raising temperature because the cohesive forces weaken. To the best of our knowledge, this work for the first time calculates the potential of mean force, viscosity, and Hildebrand solubility parameter of glycerol by MD simulation.     

Critical properties of non-spherical molecule fluids from the virial expansion

Critical constants of pure fluids (as important reference data in constructing vapour-liquid phase diagrams and basic input of various estimation methods) were determined for systems of non-spherical Kihara molecules; values of the critical temperature, density, compression factor and pressure of fluids composed of prolate and oblate molecules were evaluated from the fourth-order virial expansion. The second and third virial coefficients of the Kihara molecules were determined by applying the recently proposed method in which the effect of molecular core geometry and functional dependence of a pair interaction on the surface-surface distance are factorized and the former contribution determined from a formula for the corresponding hard convex body virial coefficient. The virial expansion for non-spherical Kihara molecules is applied to determine the critical constants of n-alkanes (methane to octane) and cyclic hydrocarbons (cyclopentane, cyclohexane, benzene and naphthalene); a fair agreement with experimental data was found.     

New regularities and an equation of state for liquids

Three regularities have been introduced for liquids (T < T_C and ρ > ρ_C) based on average potential energy. The experimental data have been used to show the validity of the regularities. First, there exists near-linearity relation between and ρ for all isotherms of a liquid, where P_i and ρ are internal pressure and density, respectively. Second, changes linearly with ρ for each isotherm of any liquid, where Z and V_m are compressibility factor and molar volume, respectively. Third, a new regularity using the definition of bulk modulus and our new equation of state between reduced bulk modulus and density has been introduced, that is versus ρ must be linear for all isotherms of a liquid where B_r is the reduced bulk modulus.

A new equation of state has been also derived. The density of some liquids in the extensive ranges of temperature and pressure has been calculated using the new equation of state. The densities calculated from this equation agree with experiment to better than 0.3%. The new equation of state can predict internal pressure, thermal expansion coefficient, and isothermal compressibility of liquids within experimental error.