The ν9 band of diazirine,H2CN2, by Doppler-limited Fourier transform infrared spectroscopy

The Doppler-limited infrared spectrum of diazirine was recorded using a high-information Fourier transform spectrometer with a resolution of 0.0054 cm^?1. The rovibrational structure of the ν₉ fundamental (CH₂ rocking) at 1124.9144 cm^?1, which is a C-type band, was analyzed in detail with extensive use of spectrum simulation and correlation diagrams. The molecular constants for the upper energy level of this band were obtained from the overall rovibrational assignment of more than 2000 transitions, which cover the region from 1070 to 1220 cm^?1.     

High resolution FT-IR spectrum of tricarbon bisulfide,SCCCS

The high resolution Fourier transform infrared spectra of thev ₄-v ₂ andv ₇ band systems of tricarbon disulfide, SCCCS, were measured with a Bomem D A3.002 interferometer and an apodized resolution of 0.004 cm^–1. The rotational structure of the bandsv ₄-v ₂, (v ₄+v ₇)–(v ₂+v ₇), (v ₄+2v ₇)–(v ₂+2v ₇) andv ₇ could be resolved and assigned. The analysis confirmed that SCCCS displays the dynamics of a linear molecule.     

Millimeter-wave spectrum and internal rotation of 1-silylpropyne,CH3CCSiH3

Rotational transitions of CH₃CCSiH₃ have been observed in the millimeter-wave region using a computer-controlled source-frequency modulation spectrometer with a 1.8-m-long free space absorption cell. The observed spectrum clearly showed the effect of internal rotation with a small potential barrier. It has been analyzed by calculating the torsion-rotation energies on the basis of torsional wave functions obtained by diagonalizing the torsional part of the Hamiltonian. The least-squares analysis has yielded the rotational constant B = 2068.2817(4) MHz and a few centrifugal distortion constants. The barrier height to internal rotation has been determined to be 3.77(70) cm^?1 from the contour map of the standard deviation. Also, the A rotational constant of the silyl group around the symmetry axis has been estimated by fixing the A constant of the methyl group to the value of CH₃CCH.     

Infrared diode-laser spectrum of the CH3CN ν2 band: Analysis of local resonances with ν6±1 + 2ν8±2, ν4 + ν7±1 + ν8±1, ν4 + ν6±1, ν4 + ν7±1, and 2ν70 + ν8±1 states

Fifty-one sections of infrared diode-laser spectra of acetonitrile have been measured in the region from 2283.5 to 2235.7 cm^?1. About 450 transitions belonging to the ν₂ band have been assigned for K ≦ 7 and J ≦ 44. Anomalies found in the rotational structure have been proven to be due to five local resonances. Observed transition frequencies have been fitted by a least-squares method to a model which includes Fermi-type resonances (Δk = 0, Δ? = ± 3n) with ν₆^±1 + 2ν₈^±2 and ν₄ + ν₇^±1 + ν₈^±1 states, x, y-type Coriolis resonances (Δk = ±1, Δ? = ?3n ± 1) with ν₄ + ν₆^±1 and ν₄ + ν₇^±1 + ν₈^±1 states, and a centrifugal-distortion-type resonance (Δk = ±2, Δ? = ?3n ± 2) with a 2ν₇⁰ + ν₈^±1 state. The 11 × 11 dimensional energy matrix has been diagonalized in order to obtain the perturbed energy levels. The standard deviation for the fit is 1.075 × 10^?3 cm^?1. The molecular constants determined are also listed.     

The vibrational energy manifold of the lowest lying bending mode of tricarbon oxide sulfide,OCCCS,as determined by relative intensity measurements

The determination of a precise vibrational energy level scheme for the two-dimensional bending mode of tricarbon oxide sulfide (3-thioxo-1,2-propadiene-1-one), OCCCS, has been carried out by relative intensity measurements of rotational transitions up to the seventh excited vibrational state of ν₇. The harmonic wavenumber ω₇ was determined to be 84.50 ± 0.63 cm^?1 while the anharmonicity constant χ₇₇ was found to be ?0.62 ± 0.11 cm^?1, respectively. A linear dependence of the expectation value of the electric dipole moment on the vibrational quantum number υ₇ was found. All results confirm that in O CCCS the potential function describing the two-dimensional oscillator of ν₇ is very harmonic without a perturbing barrier to linearity as was found in the case of OCCCO.     

De novo design of molecular architectures by evolutionary assembly of drug-derived building blocks

An evolutionary algorithm was developed for fragment-based de novo design of molecules (TOPAS, TOPology-Assigning System). This stochastic method aims at generating a novel molecular structure mimicking a template structure. A set of 25,000 fragment structures serves as the building block supply, which were obtained by a straightforward fragmentation procedure applied to 36,000 known drugs. Eleven reaction schemes were implemented for both fragmentation and building block assembly. This combination of drug-derived building blocks and a restricted set of reaction schemes proved to be a key for the automatic development of novel, synthetically tractable structures. In a cyclic optimization process, molecular architectures were generated from a parent structure by virtual synthesis, and the best structure of a generation was selected as the parent for the subsequent TOPAS cycle. Similarity measures were used to define `fitness', based on 2D-structural similarity or topological pharmacophore distance between the template molecule and the variants. The concept of varying library `diversity' during a design process was consequently implemented by using adaptive variant distributions. The efficiency of the design algorithm was demonstrated for the de novo construction of potential thrombin inhibitors mimicking peptide and non-peptide template structures.     

What you thought you already knew about the bending motion of triatomic molecules

The bending vibrations of linear, quasilinear, and bent molecules are qualitatively different phenomena. Each of these cases has been fully described by quantum mechanical formulations in the last half century, but important two-dimensional aspects of all three cases as well as the relationship between the three types of bending behavior remain difficult to visualize. Simple two-dimensional figures can help to provide an introduction to basic spatial and mathematical aspects of the bending problem.