Surface pressure driven supramolecular architectures from mixed H-aggregates of dye-capped azobenzene derivative

We demonstrate a soft chemical approach for the synthesis of dimensionally dictated functionalized mesostructures by continuous tuning of the surface molecular density of a photoreceptable molecule (E)-1-(3-chloro-4-(octyloxy)phenyl)-2-phenyldiazene (compound 1) with Rhodamine B (Rh B). Highly oriented cylindrical microtubules with a hollow center running the entire distance of the assembly in a parallel-packed configuration were formed at the air-water interface. The surface tension driven self-organized structures were evidenced from electronic absorption and steady-state fluorescence spectroscopy in conjunction with optical, polarizing, and epifluorescence microscopy and microspectroscopy; the structural building blocks were identified to be mixed H-aggregates from compound 1 and Rh B of 1:1 stoichiometry, corroborated by a blue shift in the characteristic absorption features. The appearance of a crossover point (apparent isosbestic point) instead of a sharp defined isosbestic point in the absorption spectra signified the formation of mixed H-aggregates from trans-azobenzenes in ion-dipole interaction with the charged Rh B. Increasing the temperature induced an end-to-end self-assembly of the hollow tubules, and photoisomerization of compound 1 did not serve as a trigger to induce self-organization. A nonfluorescent planar crystalline morphology with irregular topology was observed for its isomer (E)-1-(4-chlorophenyl)-2-(4-(octyloxy)phenyl) diazene (compound 2).     

Analysis of human telomerase activity and function by two color single molecule coincidence fluorescence spectroscopy

Telomerase is a nonclassical DNA polymerase that uses its integral RNA as a template to synthesize telomeric repeats onto chromosome ends. The molecular mechanism of telomerase is unique and involves a translocation step after the synthesis of each telomeric repeat. To directly measure the enzymatic turnover of substrate and the efficiency of the translocation step we have extended our two-color single molecule fluorescence coincidence method (Anal.Chem. 2003, 75, 1664-1670). The method employs Cy5-dATP incorporation into a DNA primer that has been prelabeled with a reference fluorophore. Measurements are performed in the single molecule regime and products, which necessarily have both fluorophores, are excited by two independent lasers, and give rise to coincident events. By counting the number of coincident events and using the coincidence detection efficiency, it is possible to determine the number of the extended products generated by attomole quantities of telomerase, without separation or the use of PCR or radioactivity. Histograms of the logarithms of the ratios of the Cy5 to the reference fluorophore fluorescence can be used to determine the length distribution of the products and hence the enzyme processivity. The mean processivity obtained from the single molecule fluorescence coincidence assay is 0.32 +/- 0.04, in good agreement with the value of 0.37 +/- 0.05 derived from the direct radioactive assay approach. The function of the alignment domain of human telomerase RNA in sustaining catalytic activity in vitro has been reevaluated using this method. Together with our previous results (Nucleic Acids Res. 2002, 30, 4470-4480) these experiments identify the essential residues in the alignment domain of human telomerase RNA that contribute to the activity and processivity of telomerase.     

Stereoselective total synthesis of achaetolide and reconfirmation of its absolute configuration

The stereoselective total synthesis of achaetolide 1 has been achieved and its absolute stereochemistry has been reconfirmed to be 3S,6R,7S,9R configuration. Keck allylation, Sharpless asymmetric dihydroxylation, and ring closing metathesis are the key steps involved in the target synthesis.     

Development and validation of TLC‐densitometric method for determination of lipid A adjuvant as a bulk and in solid fat nanoemulsions

A simple, sensitive, selective and precise high‐performance thin‐layer chromatographic method was developed for determination of lipid A (MPLA) adjuvant as a bulk and in solid fat nanoemulsions. Chromatographic separations were performed on thin‐layer chromatography aluminum plates precoated with silica gel 60 F‐254 as stationary phase and chloroform–methanol–ethyl acetate solution (10:2:4, v/v/v) as mobile phase. With this solvent system, compact spots for MPLA at R_f value 0.80 ± 0.02 were obtained. Densitometric analysis of MPLA was carried out in absorbance mode at 357 nm. Linear regression analysis for the calibration plots showed good linear relationship with r = 0.9996 in the concentration range of 20–100 ng/spot. The mean values (±SD) of slope and intercept were found to be 7.355 ± 0.006 and 109.52 ± 0.170, respectively. Limits of detection (LOD) and quantitation (LOQ) were observed at 3.096 and 9.382 ng/spot, respectively.The method was validated for precision, accuracy, robustness and recovery as per the International Conference on Harmonization guidelines. Statistical analysis proved that the developed method for quantification of MPLA as a bulk and in solid fat nanoemulsions is reproducible, selective and economical. This method could be applied for quantitative assay of MPLA in lipid‐based vaccine formulations. Copyright © 2015 John Wiley & Sons, Ltd.     

Tunnelling Dynamics of Kicked Systems: A Route to Tunnelling Control

The effects of discontinuously time-varying perturbations on the dynamics of a particle moving in harmonic, symmetric double well and symmetric triple well potentials, are investigated both classically and quantum mechanically. The quantum dynamics is followed using the time-dependent Fourier grid Hamiltonian (TDFGH) method while the classical dynamics is analyzed within the framework of classical Hamiltonian mechanics. Depending on the spatial symmetry of the perturbation and the characteristic features of the reversal time , different types of ‘phase space’ structures are observed in each of the potentials. For symmetric double and triple well potentials, quantum dynamics reveals that complete destruction of tunnelling (CDT) can be achieved in the presence of a time-dependent spatially asymmetric perturbing field that is continuous in time. Any discontinuity in time-variation of the perturbation may induce over the barrier transition. The relevance of these results in the context of (i) tunnelling control and (ii) quantum computing with 3-state or 2-state quantum registers is briefly discussed.