Towards a black‐box for biological EXAFS data analysis. II. Automatic BioXAS Refinement and Analysis (ABRA)

In biological systems, X‐ray absorption spectroscopy (XAS) can determine structural details of metal binding sites with high resolution. Here a method enabling an automated analysis of the corresponding EXAFS data is presented, utilizing in addition to least‐squares refinement the prior knowledge about structural details and important fit parameters. A metal binding motif is characterized by the type of donor atoms and their bond lengths. These fit results are compared by bond valance sum analysis and target distances with established structures of metal binding sites. Other parameters such as the Debye–Waller factor and shift of the Fermi energy provide further insights into the quality of a fit. The introduction of mathematical criteria, their combination and calibration allows an automated analysis of XAS data as demonstrated for a number of examples. This presents a starting point for future applications to all kinds of systems studied by XAS and allows the algorithm to be transferred to data analysis in other fields.     

New Cyclic and Polycyclic Ring Systems Containing Group 14 (Si,Ge, Sn) and 16 (S,Se, Te) Elements

The reactions of Me₂MCl₂ (M = Si, Ge, Sn), Si₂Me₄Cl₂, Si₂Me₂Cl₃, Si₂Me₂Cl₄ and CH₂(SiCl₂Me)₂, and suitable mixtures thereof, with H₂S / NEt₃ and Li₂E (E = Se, Te) have been investigated and lead to a variety of new group 14 chalcogenide systems.     

1,2- and 1,3-diphosphetanes from alkylidenephosphines

Abstract

Alkyl- or arylbis(trimethylsilyl)phosphines as well as tris(trimethylsilyl)phosphine and the corresponding arsines react with acyl chlorides to give [1-(trimethylsiloxy)alkylidene]phosphines 1 and -arsines 2; most of their 2,2-dimethylpropylidene derivatives are thermally stable at room temperature. With the same class of phosphines as starting compounds and carbon disulfide [bis(trimethylsilylsulfano)methylidene]phosphines 3 are formed, whereas [(dialkylamino)methylidene]-4 and [diarylmethylidene]phosphines 5 or the corresponding arsines 6 and 7 can be obtained from acyl amides or ketones.¹     

The possible discovery of neutron activation in 1910

One-hundred-two years ago, on 21 April 1910, the Austrian chemist Carl Auer von Welsbach published a short comment on a fundamental discovery he had made in the field of nuclear sciences. He reported that “jonium” (²³⁰Th) was able to induce radioactivity in other materials if stored in contact with the ionium sample. He was well aware that this observation was “not quite in agreement with current theories”, because, as a basic principle, a radioactive substance cannot activate an inactive substance. Since he could not remove any superficial contamination, he concluded that the previously inactive materials had become radioactive themselves. Auer von Welsbach predicted that this observation “might be of importance for the mysterious field of radioactivity research”. In fact, we believe that in this experiment he incidentally discovered neutron activation and the production of artificial radionuclides (24 years before I. Curie and F. Joliot) or even induced nuclear fission. The neutron source in his experiments is yet unknown and shall be identified in this project. The neutrons could have been produced from nuclear reactions with impurities of beryllium in the sample. Auer von Welsbach may even have observed nuclear fission 29 years before O. Hahn, F. Straßmann, L. Meitner and O. R. Frisch. In any case, he may have noticed the effects of neutron radiation—22 years before its discovery by J. Chadwick. The main aim of this interdisciplinary project (of which preliminary results are presented herein) is to repeat the 1910-experiment and to identify the source of the neutrons. It will be equally important to investigate the historical reasons and circumstances why Auer’s report remained mostly uncommented in the scientific community. The hypothetical consequences are worth discussion: Auer’s publication could have started the “nuclear age” much earlier than it finally began, with all the consequences for mankind.     

Selective switching of individual multipole resonances in single dielectric nanoparticles

Following Mie theory, nanoparticles made of a high‐refractive‐index dielectric, such as silicon, exhibit a resonator‐like behavior and very rich resonance spectra. Which electric or magnetic particle mode is excited depends on the wavelength, the refractive‐index contrast relative to the environment, and the geometry of the nanoparticle itself. In addition, the spatial structure of the impinging light field plays a major role in the excitation of the nanoparticle resonances. Here, it is shown that, by tailoring the excitation field, individual multipole resonances can be selectively addressed while suppressing the excitation of other particle modes. This enables a detailed study of selected individual resonances without interference by the other modes.

     

Heavy Alkali Metal Manganate Complexes: Synthesis,Structures and Solvent-Induced Dissociation Effects

Rare examples of heavier alkali metal manganates [{(AM)Mn(CH₂SiMe₃)(N^‘Ar)₂}_∞] (AM=K, Rb, or Cs) [N^‘Ar=N(SiMe₃)(Dipp), where Dipp=2,6-iPr₂-C₆H₃] have been synthesised with the Rb and Cs examples crystallographically characterised. These heaviest manganates crystallise as polymeric zig-zag chains propagated by AM⋅⋅⋅π-arene interactions. Key to their preparation is to avoid Lewis base donor solvents. In contrast, using multidentate nitrogen donors encourages ligand scrambling leading to redistribution of these bimetallic manganate compounds into their corresponding homometallic species as witnessed for the complete Li - Cs series. Adding to the few known crystallographically characterised unsolvated and solvated rubidium and caesium s-block metal amides, six new derivatives ([{AM(N^‘Ar)}_∞], [{AM(N^‘Ar)⋅TMEDA}_∞], and [{AM(N^‘Ar)⋅PMDETA}_∞] where AM=Rb or Cs) have been structurally authenticated. Utilising monodentate diethyl ether as a donor, it was also possible to isolate and crystallographically characterise sodium manganate [(Et₂O)₂Na(ⁿBu)Mn[(N^‘Ar)₂], a monomeric, dinuclear structure prevented from aggregating by two blocking ether ligands bound to sodium.     

Characterization of Functional Groups in Estuarine Dissolved Organic Matter by DNP-enhanced 15N and 13C Solid-State NMR

Estuaries are key ecosystems with unique biodiversity and are of high economic importance. Along the estuaries, variations in environmental parameters, such as salinity and light penetration, can modify the characteristics of dissolved organic matter (DOM). Nevertheless, there is still limited information about the atomic-level transformations of DOM in this ecosystem. Solid-state NMR spectroscopy provides unique insights into the nature of functional groups in DOM. A major limitation of this technique is its lack of sensivity, which results in experimental time of tens of hours for the acquisition of ¹³C NMR spectra and generally precludes the observation of ¹⁵N nuclei for DOM. We show here how the sensitivity of solid-state NMR experiments on DOM of Seine estuary can be enhanced using dynamic nuclear polarization (DNP) under magic-angle spinning. This technique allows the acquisition of ¹³C NMR spectra of these samples in few minutes, instead of hours for conventional solid-state NMR. Both conventional and DNP-enhanced ¹³C NMR spectra indicate that the ¹³C local environments in DOM are not strongly modified along the Seine estuary. Furthermore, the sensitivity gain provided by the DNP allows the detection of ¹⁵N NMR signal of DOM, in spite of the low nitrogen content. These spectra reveal that the majority of nitrogen is in the amide form in these DOM samples and show an increased disorder around these amide groups near the mouth of the Seine.