New example of proline-induced fragmentation in electrospray ionization mass spectrometry of peptides

The positive ion electrospray ionization (ESI+) mass spectra of peptides usually display only protonated molecules provided that soft ionization conditions are applied (low cone voltage to prevent in-source dissociations). Such ions can be multiply charged depending on the molecular weight of the studied compounds. We have experienced an unexpected behavior during the ESI analysis of a modified peptide of relatively high mass (3079 Da). A specific fragmentation occurred even under soft energetic conditions, leading to a mass spectrum containing multiply charged molecular and fragment ions. The selective rupture involved the amide bond between the glutamic acid and proline residues (E-P sequence). The successive replacement of each amino acid by an alanine residue (positional scanning study) was undertaken to assess which part of the sequence induced such selective and abundant fragmentation on multiply charged species. The succession P-P was evidenced as the minimum unit giving rise to the first peptide bond rupture in the sequence X-P-P. Any acidic amino acid at the X position (X = D, E) favored the fragmentation by an intramolecular interaction. Such proline-induced fragmentation occurring readily in the source differed from the literature data on the specific behavior of proline-containing peptides where bond ruptures occur solely in dissociation conditions.     

Intercalation and grafting of benzene derivatives into zinc-aluminum and copper-chromium layered double hydroxide hosts: an XPS monitoring study

We report an original strategy to describe, via X-ray photoelectron spectroscopy (XPS) measurements, the interactions between the organic and the mineral sub-systems within a multifunctional hybrid material. A tunable layered double hydroxide (LDH) host system, either a Zn(2)Al- or Cu(2)Cr-hydrotalcite like compound, is modified with the insertion of the organic guest entities, 4-phenol-sulfonate (HBS) or -carboxylate (HBC). The resulting interactions are studied at two levels: after the organic molecules' insertion in the host LDH (ionic exchange between the LDH counter-ions and the organic anions) and after the condensation (grafting) of the organic species onto the mineral layers when thermally treated. For the inserted material, the main XPS results show a stabilization of the organic molecules within the mineral sheets via H bonding as found elsewhere with FTIR study, the mineral matrix being unchanged. The XPS signal of the organic molecules slightly changes with a widening of core peaks, attesting to some local surrounding modifications. When heating up the Zn(2)Al hybrid material, stronger interactions between organic and inorganic systems appeared from around 80 °C with some obvious electronic changes as monitored with the XPS S2p signal of the HBS guest molecules. At the same time, the PXRD pattern clearly shows a decrease of the basal spacing according to a two step contraction process which could be interpreted as a progressive organic molecule condensation onto the inorganic layers via iono-covalent bonds. A copper-chromium LDH is also studied to probe the same kind of interactions with the HBS molecules. The ability of distortion of such mineral material involves a peculiar process of contraction from 40 °C with the immediate and effective anchorage of organic molecules.     

Early detection of apoptosis in living cells by fluorescence correlation spectroscopy

Early detection of apoptotic cells via caspase activity is demonstrated with fast response time. Fluorescence correlation spectroscopy (FCS) is used to identify the presence of a cleaved fluorogenic probe based on the fluorescence of rhodamine 110 in Jurkat cells. FCS curves are shown to be markedly different for autofluorescent (non-apoptotic) cells, whereas cells with cleaved probe showed diffusion and molecular brightness characteristic of rhodamine 110. Using FCS measurements, cells were identified as apoptotic on the basis of the presence of autocorrelated fluorescence, average molecular brightness (η), and molecular dwell time (τ _D). Apoptotic cells identified in this manner were detected as early as 45 min after induction. Unlike other methods with similar identification times, such as western blotting and electron microscopy, cells remain viable for further analysis. This multi-parameter approach is rapid, flexible, and does not require transfection of the cells prior to analysis, enabling apoptosis to be identified early in a wide variety of cell types.      

General methodology for the chemoselective N-alkylation of (2,2,6,6)-tetramethylpiperidin-4-ol: Contribution of microwave irradiation

A convenient method to access a broad variety of N-alkyl-(2,2,6,6)-tetramethylpiperidin-4-ol compounds is reported. The thermal treatment of a mixture of (2,2,6,6)-tetramethylpiperidin-4-ol and allyl or benzyl bromide derivatives gave the corresponding N–alkylated compounds in good yields while leaving the hydroxyl functional group intact. Whereas 40?h were needed to reach complete conversion, microwave irradiation allowed the reaction time to be reduced (20?min) and improved the yields in most cases.     

The use of electrothermal vaporizer coupled to the inductively coupled plasma mass spectrometry for the determination of arsenic,selenium and transition metals in biological samples treated with formic acid

A fast method for the determination of As, Co, Cu, Fe, Mn, Ni, Se and V in biological samples by ETV-ICP-MS, after a simple sample treatment with formic acid, is proposed. Approximately 75 mg of each sample is mixed with 5 mL of formic acid, kept at 90 °C for 1 h and then diluted with nitric acid aqueous solution to a 5% (v/v) formic acid and 1% (v/v) nitric acid final concentrations. A palladium solution was used as a chemical modifier. The instrumental conditions, such as carrier gas flow rate, RF power, pyrolysis and vaporization temperatures and argon internal flow rate during vaporization were optimized. The formic acid causes a slight decrease of the analytes signal intensities, but does not increase the signal of the mainly polyatomic ions (¹⁴N³⁵Cl⁺, ¹⁴N¹²C⁺, ⁴⁰Ar¹²C⁺, ¹³C³⁷Cl⁺, ⁴⁰Ar³⁶Ar⁺, ⁴⁰Ar³⁵Cl⁺, ³⁵Cl¹⁶O⁺, ⁴⁰Ar¹⁸O⁺) that affect the analytes signals. The effect of charge transfer reactions, that could increase the ionization efficiency of some elements with high ionization potentials was not observed due to the elimination of most of the organic compounds during the pyrolysis step. External calibration with aqueous standard solutions containing 5% (v/v) formic acid allows the simultaneous determination of all analytes with high accuracy. The detection limits in the samples were between 0.01 (Co) and 850 μg kg⁻¹ (Fe and Se) and the precision expressed by the relative standard deviations (RSD) were between 0.1% (Mn) and 10% (Ni). Accuracy was validated by the analysis of four certified reference biological materials of animal tissues (lobster hepatopancreas, dogfish muscle, oyster tissue and bovine liver). The recommended procedure avoids plasma instability, carbon deposit on the cones and does not require sample digestion.     

Membrane affinity of the amphiphilic marinobactin siderophores

Marinobactins are a class of newly discovered marine bacterial siderophores with a unique amphiphilic structure, suggesting that their functions relate to interactions with cell membranes. Here we use small and large unilamellar L-alpha-dimyristoylphosphatidylcholine vesicles (SUVs and LUVs) as model membranes to examine the thermodynamics and kinetics of the membrane binding of marinobactins, particularly marinobactin E (apo-M(E)) and its iron(III) complex, Fe-M(E). Siderophore-membrane interactions are characterized by NMR line broadening, stopped-flow spectrophotometry, fluorescence quenching, and ultracentrifugation. It is determined that apo-M(E) has a strong affinity for lipid membranes with molar fraction partition coefficients K(x)()(apo)(-)(M)E = 6.3 x 10(5) for SUVs and 3.6 x 10(5) for LUVs. This membrane association is shown to cause only a 2-fold decrease in the rate of iron(III) binding by apo-M(E). However, upon the formation of the iron(III) complex Fe-M(E), the membrane affinity of the siderophore decreased substantially (K(x)()(Fe)(-)(M)E = 1.3 x 10(4) for SUVs and 9.6 x 10(3) for LUVs). The kinetics of membrane binding and dissociation by Fe-M(E) were also determined (k(on)(Fe)(-)(M)E = 1.01 M(-)(1) s(-)(1); k(off)(Fe)(-)(M)E = 4.4 x 10(-)(3) s(-)(1)). The suite of marinobactins with different fatty acid chain lengths and degrees of chain unsaturation showed a range of membrane affinities (5.8 x 10(3) to 36 M(-)(1)). The affinity that marinobactins exhibit for membranes and the changes observed upon iron binding could provide unique biological advantages in a receptor-assisted iron acquisition process in which loss of the iron-free siderophore by diffusion is limited by the strong association with the lipid phase.     

New effects in light scattering in disordered media and coherent backscattering cone: systems of magnetic particles

Single and multiple scattering of light by magnetic particles and their implications to the coherent backscattering effect are reported. Single scattering of light by small magnetic particles presents unusual features such as forward-backward asymmetry and resonance effects. In multiple scattering, this leads to a global decrease in the localization parameter kl(*), which exhibits an oscillatory dependence on the scatterer magnetic permeability. By considering magnetic scatterers following a Curie-Weiss susceptibility law, we suggest that kl(*) can be tuned by varying the temperature.     

Low temperature study of micrometric powder of melted Fe50Mn10Al40 alloy

Melted Fe₅₀Mn₁₀Al₄₀ alloy powder with particle size less than 40 μm was characterized at room temperature by XRD, SEM and XPS; and at low temperatures by Mössbauer spectrometry, ac susceptibility, and magnetization analysis. The results show that the sample is BCC ferromagnetic but with a big contribution of paramagnetic sites, and presents super-paramagnetic and re-entrant spin-glass phases with critical temperatures of 265 and 35 K, respectively. The presence of the different phases detected is due to the disordered character of the sample and the competitive magnetic interactions. The obtained values of the saturation magnetization and the coercive field as a function of temperature present a behavior which indicates a ferromagnetic phase. However, the behavior of the FC curve and that of the coercive field as a function of temperature suggest that the dipolar magnetic interaction between particles contributes to the internal magnetic field in the same way as was reported for nanoparticulate powders.     

Enantioselective synthesis of saframycin A and evaluation of antitumor activity relative to ecteinascidin/saframycin hybrids

[formula: see text] A short synthesis of saframycin A is described which begins with a readily available intermediate previously utilized for the total synthesis of ecteinascidin 743. A key step in this synthesis is the use of 1-fluoro-3,5-dichloropyridinium triflate to oxidize a phenolic ring to a 1,4-benzoquinone unit while simultaneously cleaving a methoxymethyl ether of a different phenolic ring to the corresponding phenol (4-->5). The common intermediate (2) for the synthesis of saframycin A (1) and ecteinascidin 743 also allowed the synthesis of two hybrids of these structures (6 and 7). Whole cell bioassays for antitumor activity using lung, colon, melanoma, and prostate-derived tumor cell lines allowed a clear correlation of structure with biological activity in this series.     

Mononuclear Iridium Dinitrogen Complexes Bonded to Zeolite HY

The adsorption of N₂ on structurally well‐defined dealuminated HY zeolite‐supported iridium diethylene complexes was investigated. Iridium dinitrogen complexes formed when the sample was exposed to N₂ in H₂ at 298 K, as shown by infrared spectra recorded with isotopically labeled N₂. Four supported species formed in various flowing gases: Ir(N₂), Ir(N₂)(N₂), Ir(C₂H₅)(N₂), and Ir(H)(N₂). Their interconversions are summarized in a reaction network, showing, for example, that, in the presence of N₂, Ir(N₂) was the predominant dinitrogen species at temperatures of 273–373 K. Ir(CO)(N₂) formed transiently in flowing CO, and in the presence of H₂, rather stable iridium hydride complexes formed. Four structural models of each iridium complex bonded at the acidic sites of the zeolite were employed in a computational investigation, showing that the calculated vibrational frequencies agree well with experiment when full calculations are done at the level of density functional theory, independent of the size of the model of the zeolite.