Finite Element Methods for a Model for Full Waveform Acoustic Logging

A model is defined to simulate the propagation of waves in aradially symmetric, isotropic, composite system consisting ofa fluid-filled well bore ^f through a fluid-saturated poroussolid ^p. Biot's equations of motion are chosen to describe thepropagation of waves in ^p, while the standard equation of motionfor compressible inviscid fluids is used for ^f, with appropriateboundary conditions at the contact surface between ^f and ^p.Also, absorbing boundary conditions for the artificial boundariesof ^p are derived for the model, their effect being to make themtransparent for waves arriving normally First, results on the existence and uniqueness of the solutionof the differential problem are given and then a discrete-time,explicit finite element procedure is defined and analysed, withfinite element spaces suited for radially symmetric problemsbeing used for the spatial discretisation.     

A Non‐damaging Method to Analyze the Configuration and Dynamics of Nitrotyrosines in Proteins

Often, deregulation of protein activity and turnover by tyrosine nitration drives cells toward pathogenesis. Hence, understanding how the nitration of a protein affects both its function and stability is of outstanding interest. Nowadays, most of the in vitro analyses of nitrated proteins rely on chemical treatment of native proteins with an excess of a chemical reagent. One such reagent, peroxynitrite, stands out for its biological relevance. However, given the excess of the nitrating reagent, the resulting in vitro modification could differ from the physiological nitration. Here, we determine unequivocally the configuration of distinct nitrated‐tyrosine rings in single‐tyrosine mutants of cytochrome c. We aimed to confirm the nitration position by a non‐destructive method. Thus, we have resorted to ¹H‐¹⁵N heteronuclear single quantum coherence(HSQC) spectra to identify the ³J(N? H) correlation between a ¹⁵N‐tagged nitro group and the adjacent aromatic proton. Once the chemical shift of this proton was determined, we compared the ¹H‐¹³C HSQC spectra of untreated and nitrated samples. All tyrosines were nitrated at ε positions, in agreement to previous analysis by indirect techniques. Notably, the various nitrotyrosine residues show a different dynamic behaviour that is consistent with molecular dynamics computations.     

Assessment of Temporal Variability Trends for Inorganic Parameters in Ground Water

Abstract

The passage of environmental legislation in the United States has dramatically increased ground-water monitoring in the vicinity of point sources such as abandoned waste disposal sites, operational waste disposal sites, and municipal landfills. Even though these programs require sufficient sampling to define background conditions as part of the site characterization process, there is still a general absence of quantitative information on the magnitude and periodicity of temporal fluctuations for inorganic constituents in ground water. This paper presents an approach that has been used to develop an initial characterization of these temporal trends.

A search if on-going site investigation reports identified 18 facilities across the United States that had monthly monitoring data at a frequency of at least monthly for a period of one and a half years or longer (15 RCRA-C hazardous waste disposal facilities with monthly data for a period of 2–3 years, 2 research monitoring locations with biweekly monitoring data for a period of one and a half years, and a precious metal mining operation with daily monitoring data for a limited number of parameters for a period of one and a half years). The data from these site investigations were used to describe the temporal variability of several ground-water constituents including pH, specific conductance, sulfate, sodium, chloride, alkalinity, silica, iron, and manganese. An assessment of these data suggests that the magnitude of temporal ground-water fluctuations are on the order of 20 percent of the average concentration for chloride, 10 percent of the average concentration for sodium, manganese and specific conductance, 5 percent of the average concentration for alkalinity and pH, and essentially zero for silica. The apparent periodicities of these temporal fluctuations ranged from 40 weeks to approximately 2 years. The magnitude and periodicities in ground water are substantially smaller than those that have been reported and documented for the same constituents in surface waters. These differences are due to the fact that sunlight and wind, two energy factors that drive temporal cycles in surface water, do not exert a similar influence on the environmental chemistry of ground-water constituents.     

HUMIC MACROMOLECULES IN NATURAL WATERS

Abstract

Humic substances are the major organic constituents of soils and sediments. They also occur in small concentrations in natural surface waters and groundwaters. They form through the breakdown of plant and animal tissues by chemical and biological processes that tend to produce complex chemical structures that are more stable than the original material from which they were derived. One of the more important characteristics of humic substances is their ability to form water-soluble and water-insoluble complexes with metal ions and hydrous oxides and to interact with clay minerals and various organic compounds such as alkanes, fatty acids, and toxic organic substances such as pesticides.     

PHOTODYNAMIC ACTION OF CHEMICALLY RELATED FLAVONES

Abstract— Flavone, polyhydroxyflavones (apigenin, fisetin, kaempferol, luteolin, myricetin, quercetin, resokaempferol and robinetin), polymethoxyflavones and acetylated and benzylated flavones were tested for photodynamic activity using Tetrahymena pyriformis T as the test organism. Among these compounds, polymethoxyflavones showed the highest order of activity, followed by flavone and then flavone derivatives with OH and OCH₃ groups. Resokaempferol was the only active polyhydroxyflavone, the remainder being inactive such as the benzyl-derivative. The methoxyl group in the 5–position and an increase in number of methoxyl groups from one to three in the phenolic portion of the flavonoid tended to decrease photodynamic activity. Tetrahymena killed photodynamically by polymethoxyflavones were morphologically altered by blister-like blebs. Polymethoxyflavones showed the lowest cytotoxicity and the greatest photodynamic activity among those flavonoids tested. The majority of the favonoids in this series have absorption spectra in the 320–370 nm region.     

INTERACTION OF DIBUCAINEHCl LOCAL ANESTHETICS WITH BACTERIORHODOPSIN IN PURPLE MEMBRANE: A SPECTROSCOPIC STUDY

Several spectroscopic techniques (absorption, emission, transient absorption and differential scanning calorimetry--DSC) were used to investigate the deprotonation of dibucaine.HCl in a hydrophobic environment, and the interaction sites and mechanisms of the local anesthetic dibucaine.HCl on bacteriorhodopsin (bR) in purple membrane. The important results are summarized as follows: (1) the visible absorption features of native (lambda max = 568 nm) and deionized (lambda max = 608 nm) bR are sensitive to the amount of dibucaine.HCl added; (2) the emission spectrum of dibucaine.HCl embedded in the retinal-free mutant bR is similar to that of dibucaine free base in Triton X-100 micellar solutions; (3) the phosphorescence emission of dibucaine at 77 K is completely quenched by bR and the fluorescence quenching rate for the incorporated dibucaine.HCl in bR was determined as kq = 4.09 x 10(13) M-1 s-1; (4) the incorporation of dibucaine.HCl in bR inhibits the slow component rate of formation of M412 and decreases the amount of M412 formation in the photochemical cycle of bR; and (5) the thermal stability of native bR was measured by DSC in the presence and absence of dibucaine and yielded an endothermic transition at 95.9 +/- 1.0 degrees C with 13.6 J/g (3.25 +/- 0.12 cal/g) of enthalpy changes. All observations suggest that the action site of the local anesthetic, dibucaine.HCl, is near or at the chromophore, i.e. the retinal Schiff base of bR. The anesthetic action on bR purple membrane is probably via a specific site binding, but not a conformational mechanism.     

Electron spin resonance studies of 199HgH, 201HgH, 199HgD and 201HgD isolated in neon and argon matrices at 4K: an electronic structure investigation

Various isotopomers of the mercury hydride radical (HgH) have been generated in a microwave discharge and trapped in neon and argon matrices at 4 K for electron spin resonance (ESR) investigations. Both the dipolar (A_dip) and isotropic (A_iso) components of the nuclear hyperfine interactions have been directly measured for ¹⁹⁹Hg, ²⁰¹Hg, H and D. Electronic structure information for HgH in its X²Σ ground state obtained from the hyperfine data is compared with theoretical results from several different computational methods. The hyperfine interactions in HgH are unusually large with A_iso(¹⁹⁹Hg) = 6859(3), A_dip(¹⁹⁹Hg) = 446(3), A_iso(H) = 730(2) and A_dip(H) = 0(2) MHz. A standard analysis of the hyperfine interactions demonstrates the need for a more in-depth theoretical treatment of HgH that should include relativistic effects. An interesting shift in spin density is observed when deuterium replaces hydrogen in HgH. The decreased spin density on deuterium, which was demonstrated in earlier studies, can now be more fully investigated since these new measurements confirm an associated increase in spin density on mercury     

Improved models for the phase behaviour of hydrogen fluoride: chain and ring aggregates in the SAFT approach and the AEOS model

Hydrogen fluoride presents one of the strongest hydrogen bonds known. Ring aggregates exist both in the vapour and liquid phases at low temperatures resulting in an anomalously high low-temperature vapour pressure. The effect of ring-like aggregates on the vapour—liquid phase equilibria of associating fluids is studied within the framework of the statistical associating fluid theory (SAFT) and in the chemical model of Lencka and Anderko (AEOS). The SAFT approach incorporates separate contributions to describe chain formation, association (hydrogen bonding), and long range dispersion forces. The treatment of the association interactions stems from the thermodynamic perturbation theory of Wertheim. At the first level of approximation the contribution of ring-like aggregates is neglected and only chain- and treelike structures are treated. In this work an earlier extension of the approach to incorporate ring aggregates is used to model the phase behaviour of hydrogen fluoride. The chemical model of Lencka and Anderko for associating fluids is also considered together with a modification that takes into account the formation of ring aggregates. Vapour pressures and coexistence densities are examined together with heats of vapourization, and the calculations are compared with experimental data.     

Summary of session C1: pulsar timing arrays

This paper summarizes parallel session C1: Pulsar Timing Arrays of the Amaldi10/GR20 Meeting held in Warsaw, Poland in July 2013. The session showcased recent results from pulsar timing array collaborations, advances in modelling the gravitational-wave signal, and new methods to search for and characterize gravitational waves in pulsar timing array observations.     

Exploring intermediate and massive black-hole binaries with the Einstein Telescope

We discuss the capability of a third-generation ground-based detector such as the Einstein Telescope (ET) to enhance our astrophysical knowledge through detections of gravitational waves emitted by binaries including intermediate-mass and massive black holes. The design target for such instruments calls for improved sensitivity at low frequencies, specifically in the ~ 1-10{\sim 1-10} Hz range. This will allow the detection of gravitational waves generated in binary systems containing black holes of intermediate mass, ~ 100-10000  M_\odot{\sim100-10000\,\,M_{\odot}} . We primarily discuss two different source types—mergers between two intermediate mass black holes (IMBHs) of comparable mass, and intermediate-mass-ratio inspirals (IMRIs) of smaller compact objects with mass ~ 1-10  M_\odot{\sim1-10\,\,M_{\odot}} into IMBHs. IMBHs may form via two channels: (i) in dark matter halos at high redshift through direct collapse or the collapse of very massive metal-poor Population III stars, or (ii) via runaway stellar collisions in globular clusters. In this paper, we will discuss both formation channels, and both classes of merger in each case. We review existing rate estimates where these exist in the literature, and provide some new calculations for the approximate numbers of events that will be seen by a detector like the Einstein Telescope. These results indicate that the ET may see a few to a few thousand comparable-mass IMBH mergers and as many as several hundred IMRI events per year. These observations will significantly enhance our understanding of galactic black-hole growth, of the existence and properties of IMBHs and of the astrophysics of globular clusters. We finish our review with a discussion of some more speculative sources of gravitational waves for the ET, including hypermassive white dwarfs and eccentric stellar-mass compact-object binaries.