Competition between pi and non-pi cation-binding sites in aromatic amino acids: a theoretical study of alkali metal cation (Li+, Na+, K+)-phenylalanine complexes

To understand the cation-pi interaction in aromatic amino acids and peptides, the binding of M(+) (where M(+) = Li(+), Na(+), and K(+)) to phenylalanine (Phe) is studied at the best level of density functional theory reported so far. The different modes of M(+) binding show the same order of binding affinity (Li(+)>Na(+)>K(+)), in the approximate ratio of 2.2:1.5:1.0. The most stable binding mode is one in which the M(+) is stabilized by a tridentate interaction between the cation and the carbonyl oxygen (O[double bond]C), amino nitrogen (--NH(2)), and aromatic pi ring; the absolute Li(+), Na(+), and K(+) affinities are estimated theoretically to be 275, 201, and 141 kJ mol(-1), respectively. Factors affecting the relative stabilities of various M(+)-Phe binding modes and conformers have been identified, with ion-dipole interaction playing an important role. We found that the trend of pi and non-pi cation bonding distances (Na(+)-pi>Na(+)-N>Na(+)-O and K(+)-pi>K(+)-N>K(+)-O) in our theoretical Na(+)/K(+)-Phe structures are in agreement with the reported X-ray crystal structures of model synthetic receptors (sodium and potassium bound lariat ether complexes), even though the average alkali metal cation-pi distance found in the crystal structures is longer. This difference between the solid and the gas-phase structures can be reconciled by taking the higher coordination number of the cations in the lariat ether complexes into account.     

Isolation and Determination of Volatile Organic Compounds from Water by Dynamic Purge-and-Trap Technique Coupled with Capillary Gas Chromatography

The preconcentration technique of purge-and-trap has been investigated in the present work for quantitative adsorption of volatile organic pollutants purged from water samples. A dynamic purging device with variable volume size has been constructed and tested to purge different concentrations of organic compounds. With Tenax GR as the adsorbent, a dynamic purge-and-trap technique was developed combining on-column preconcentration procedures using ambient trapping/thermal desorption/cryogenic focusing/back-flash injection prior to separation and determination using capillary gas chromatography. Various aromatic compounds in water were determined, giving linear working ranges over five orders of magnitude from 0.02 to 5000 µg/L. The analytical procedures were optimized under the assistance of ultrasonication with results validated for the determination of organic contaminants in underground water and tap water, giving over 93% recoveries and a detection limit of 0.01 µg/L, two orders of magnitude lower than those obtained using commercial available instruments with on-line configuration to minimize cross-contamination. The technique provides a potential automated method for in situ monitoring of volatile organic compounds in water.     

Orientational ordering of 4-substituted phenylcyclohexanes studied by carbon-13 two-dimensional N.M.R.

Abstract

An N.M.R. method combining the techniques of separated local field spectroscopy (SLF) and variable angle spinning (VAS) is valuable in the investigtion of nematic liquid crystals. Rapid sample spinning causes the nematic director to align along the spinning axis, resulting in narrow peaks in the C-13 N.M.R. spectrum. SLF is a two-dimensional N.M.R. method which produces a first order splitting pattern for each carbon signal from which C–H dipolar coupling constants can be determined. The order parameters for all segments of the liquid crystal molecule can then be calculated. Results for three 4′-cyanophenylcyclohexanes are considered here. These compounds are trans-substituted at the 4 position of cyclohexane ring with n-pentane (PCH5), 1-pentene (3d ₁CP) and 3-pentene (1d ₃CP), respectively.     

New laterally aromatic branched liquid crystal materials with large nematic ranges

Abstract

Three new homologous series of mesogens containing three rings in the main structure and a lateral aromatic branch have been synthesized. When the lateral aromatic branch is attached to the middle ring, monotropic phases are observed, and there is a strong tendency to form the smectic C phase. When the lateral aromatic branch is attached to an outer ring, the compounds possess purely enantiotropic nematic phases. The terminal alkoxy chain in the outer ring which has a lateral aromatic substituent can be replaced by a rigid group without disturbing the large nematic range. Selective introduction of a particular substitutent may be useful for the construction of devices possessing desirable characteristics such as non-linear optical properties.     

Liquid crystal mixtures for potential infrared applications

Liquid crystals (LCs) with diazo linkages have high dielectric and optical anisotropy. Two newly synthesized liquid crystalline compounds were dissolved in room temperature LC hosts, E7 and PTTP-24/36, to assess their properties. It was found that these mixtures have higher birefringence, larger dielectric anisotropy, and better elastic properties than the hosts. Satisfactory viscoelastic coefficients were also obtained for these mixtures, showing that they are promising LC materials for applications in the near IR region.     

A quantitative modeling of the contributions of localized surface plasmon resonance and interband transitions to absorbance of gold nanoparticles

A quantitative modeling of the contributions of localized surface plasmon resonance (LSPR) and interband transitions to absorbance of gold nanoparticles has been achieved based on Lorentz–Drude dispersion function and Maxwell-Garnett effective medium approximation. The contributions are well modeled with three Lorentz oscillators. Influence of the structural properties of the gold nanoparticles on the LSPR and interband transitions has been examined. In addition, the dielectric function of the gold nanoparticles has been extracted from the modeling to absorbance, and it is found to be consistent with the result yielded from the spectroscopic ellipsometric analysis.     

Laterally dibenzyloxy-branched nematogens with large nematic range and rich solid polymorphism

Mesogenic compounds containing four rings in the core usually have very high melting points. However, when two identical lateral benzyloxy groups are introduced on the same side of one of the central rings, the melting point is lowered dramatically and a large nematic range is retained. This range is affected by the bulkiness of the para-substituents in the lateral rings. Methyl groups can be introduced in the ortho- or meta-positions with a consequent decrease in the melting temperature without much affecting the nematic range. These compounds exhibit a rich solid polymorphism which is certainly related to the effect of the conformations of the lateral substituent on the molecular arrangment in the solid phase. Some preliminary NMR experiments on the nematic phase indicate that the molecular long axis coincides with the core axis, whereas the para-axis of the lateral fragment makes an angle close to the magic angle with respect to the molecular long axis.     

Orientational ordering in the nematic phase of 4-alkyl-4'-cyanobicyclohexanes

The orientational ordering of three liquid crystals (trans,trans-4-n-alkyl-4'-cyanobicyclohexanes) has been investigated using ¹³C NMR. 2D proton-encoded local field spectroscopy was used to determine the ¹³C-¹H dipolar coupling constants, from which the order parameters were calculated. Semi-empirical linear relations between the obtained order parameters and anisotropic ¹³C chemical shifts were established. It was found that the order parameters of the major axis of the cyclohexane rings are smaller than those of liquid crystals with phenyl rings, and the order parameters of the C-H bonds in the aliphatic chains also behave differently.