Selective ion binding by protein probed with the statistical mechanical integral equation theory

Selective ion binding by human lysozyme and its mutants is probed with the three-dimensional interaction site model theory which is the statistical mechanical integral equation theory. Preliminary and partial results of the study have been already published (Yoshida, N. et al. J. Am. Chem. Soc. 2006, 128, 12042-12043). The calculation was carried out for aqueous solutions of three different electrolytes, CaCl2, NaCl, and KCl, and for four different mutants of the human lysozyme: wild type, Q86D, A92D, and Q86D/A92D, which have been studied experimentally. The discussion of this article focuses on the cleft that consists of amino acid residues from Q86 to A92. For the wild type of protein in the aqueous solutions of all the electrolytes studied, there are no distributions observed for the ions inside the cleft. The Q86D mutant shows essentially the same behavior with that of the wild type. The A92D mutant shows strong binding ability to Na+ in the recognition site, which is in accord with the experimental results. There are two isomers of the Q86D/A92D mutant, e.g., apo-Q86D/A92D and holo-Q86D/A92D. Although both isomers exhibit the binding ability to the Na+ and Ca2+ ions, the holo isomer shows much greater affinity compared with the apo isomer. Regarding the selective ion binding of the holo-Q86D/A92D mutant, it shows greater affinity to Ca2+ than to Na+, which is also consistent with the experimental observation.     

An optical system for measuring the eccentricity of glass wool pipe — for industrial use

An optical system for measuring the eccentricity of the glass wool pipe has been developed for an industrial use. The system consists of a contact sensor, a photo light sensor and a signal processing system with a logic circuit. The system is simple, fast and efficient for practical use; it allows implementation of on-line process monitoring and alarm warning signals for unacceptable pipe eccentricity during manufacturing.     

Structural analysis of polyhydroxyurethane obtained by polyaddition of bifunctional five‐membered cyclic carbonate and diamine based on the model reaction

This article focuses on the structural analysis of polyhydroxyurethane obtained by the reaction of 2,2‐bis[p‐(1,3‐dioxolan‐2‐one‐4‐yl‐methoxy)phenyl]propane with a diamine based on the model reaction. The compounds obtained in the model reaction could be separated into hydroxyurethanes containing primary and secondary alcohol groups by preparative gel permeation chromatography with a recycling technique to determine the structures by ¹H NMR, ¹³C NMR, distortionless enhancement by polarization transfer (DEPT) and C H correlation spectroscopy to obtain hydroxyurethane carrying the primary alcohol structure moiety dominantly. The ratios were independent of the reaction temperature but somewhat dependent on the solvents and amines. © 2001 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 39: 851–859, 2001     

Chemical synthesis of poly‐γ‐glutamic acid by polycondensation of γ‐glutamic acid dimer: Synthesis and reaction of poly‐γ‐glutamic acid methyl ester

α‐Methyl glutamic acid (L ‐L )‐, (L ‐D )‐, (D ‐L )‐, and (D ‐D )‐γ‐dimers were synthesized from L ‐ and D ‐glutamic acids, and the obtained dimers were subjected to polycondensation with 1‐(3‐dimethylaminopropyl)‐3‐ethylcarbodiimide hydrochloride and 1‐hydroxybenzotriazole hydrate as condensation reagents. Poly‐γ‐glutamic acid (γ‐PGA) methyl ester with the number‐average molecular weights of 5000∼20,000 were obtained by polycondensation in N,N‐dimethylformamide in 44∼91% yields. The polycondensation of (L ‐L )‐ and (D ‐D )‐dimers afforded the polymers with much larger |[α]_D | compared with the corresponding dimers. The polymer could be transformed into γ‐PGA by alkaline hydrolysis or transesterification into α‐benzyl ester followed by hydrogenation. © 2001 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 39: 732–741, 2001     

New Transformation of 1,3‐Oxathiolane‐2‐thione into 1,3‐Dithiolan‐2‐one via Polymerization and Depolymerization

This article deals with the cationic and anionic depolymerization of polydithiocarbonate, which was synthesized by cationic polymerization of 5‐phenoxymethyl‐1,3‐oxathiolane‐2‐thione ( 1 ) using methyl triflate as the initiator. The cationic depolymerization of the obtained polymer was carried out in the presence of 5–20 mol‐% of methyl triflate or triflic acid catalyst in chlorobenzene at 60 °C for 96 h to afford 4‐phenoxymethyl‐1,3‐dithiolan‐2‐one ( 2 ) in 35–83% yield. The anionic depolymerization of the polymer was carried out in the presence of 5 mol‐% of triethylamine or potassium tert‐butoxide at 20 °C for 24 h to afford 2 in 85–100% yield.     

Addition of five‐membered cyclic carbonate with amine and its application to polymer synthesis

A bifunctional five‐membered cyclic carbonate was synthesized from carbon dioxide and diglycidyl terephthalate, and its polyaddition with alkyl diamines were carried out in DMF at room temperature to obtain the corresponding poly(hydroxyurethane)s with M_n s in the range of 6300–13200 in good yields. The structures of the obtained polymers were confirmed by IR and NMR spectroscopy and their glass‐transition and decomposition temperatures were observed at 3–29 °C and 182–277 °C, respectively. © 2000 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 38: 2375–2380, 2000     

Structure–initiator activity dependence of aminimides as thermally latent initiators in the polymerization of glycidyl phenyl ether

Novel aliphatic aminimides were synthesized from the corresponding carboxylic acid esters, 1,1‐dimethylhydrazine, and epoxides in 54–95% yields. Bulk polymerization of glycidyl phenyl ether (GPE) with 3 mol % of the aminimides was evaluated by DSC as a model process for curing of epoxy resin. All the aminimides showed no exothermic DSC peak below 120 °C but showed sharp exothermic peaks above 137 °C, indicating good thermal latency. Good relationships were observed between the calculated bond length from the carbonyl carbon to the α‐carbon of the aliphatic group (R C), DSC onset temperatures, and the thermal dissociation temperatures (T_d 's) of the aminimides. The aminimide with a longer R C bond length showed lower T_d and DSC onset temperature, that is, higher activity. © 2000 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 38: 3428–3433, 2000     

Calculation of hydration free energy for a solute with many atomic sites using the RISM theory: A robust and efficient algorithm

We have developed an algorithm for solving the reference interaction site model (RISM) equations for water near a solute molecule with many atomic sites (interaction sites). It is a hybrid of the Newton–Raphson and Picard methods and is judiciously constructed. Various considerations are given so that the computer time can be saved as much as possible. The robustness and high efficiency of the algorithm has been demonstrated for calculating hydration free energies of Met-enkephalin (a peptide with 75 sites) with different conformations. The Jacobian matrix is treated as part of the input data, and it has been found that the same matrix can be used for a considerably large set of different conformations of the solute molecule. © 1997 John Wiley & Sons, Inc. J Comput Chem 18: 1320–1326, 1997     

Polycondensations of dicarboxylic acids and diols derived from optically active amino alcohols

Polycondensations of dicarboxylic acids with diols having amide moieties derived from optically active amino alcohols were carried out. Polymers with M _ns 8,700–17,400 were obtained by the polycondensations using 1.2 eq. of 1-ethyl-3-(3-dimethylaminopropyl) carbodiimide hydrochloride (EDC·HCl) in DMF at room temperature for 8 h in satisfactory yields. The T_g of the polymer rose with decrease of the methylene chain length of the dicarboxylic acid. In the T_gs of the polymers from L-leucinol, even-odd effect was observed with increase of the methylene chain length of the dicarboxylic acid. The molecular rotation values of the polymers were constant except for the polymer from succinic acid, which showed the negatively largest one. © 1997 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 35 : 2925–2934, 1997