Use of the MALDI BioTyper system with MALDI–TOF mass spectrometry for rapid identification of microorganisms

In a clinical diagnosis microbiology laboratory, the current method of identifying bacterial isolates is based mainly on phenotypic characteristics, for example growth pattern on different media, colony morphology, Gram stain, and various biochemical reactions. These techniques collectively enable great accuracy in identifying most bacterial isolates, but are costly and time-consuming. In our clinical microbiology laboratory, we prospectively assessed the ability of matrix-assisted laser desorption ionization–time of flight mass spectrometry (MALDI–TOF MS) to identify bacterial strains that were routinely isolated from clinical samples. Bacterial colonies obtained from a total of 468 strains of 92 bacterial species isolated at the Department of Clinical Laboratory at Chiba University were directly placed on target MALDI plates followed by addition of CHCA matrix solution. The plates were then subjected to MALDI–TOF MS measurement and the microorganisms were identified by pattern matching with the libraries in the BioTyper 2.0 software. Identification success at the species and genus levels was 91.7% (429/468) and 97.0% (454/468), respectively. MALDI–TOF MS is a rapid, simple, and high-throughput proteomic technique for identification of a variety of bacterial species. Because colony-to-colony differences and effects of culture duration on the results are minimal, it can be implemented in a conventional laboratory setting. Although for some pathogens, preanalytical processes should be refined, and the current database should be improved to obtain more accurate results, the MALDI–TOF MS based method performs, in general, as well as conventional methods and is a promising technology in clinical laboratories.     

Theoretical study of the inclusion properties of 1,2,4,5-tetra(morpholinocarbonyl)benzene

Molecular inclusion by the new amide host molecule (TMB) has been reconsidered by calculating the crystal stabilization energies for the guest molecules in the TMB + guest system from the simple intermolecular potential functions of Caillet and Claverie. Water, ethylene glycol, methanol, and ethanol have been employed as guest molecules and their relative stabilities have been considered. Water has been found to be the most suitable guest molecule in the TMB + guest system. It also has been found that the guest host interaction is the most important contributor in determining the relative stabilities of the guest molecules in the TMB + guest system, but the guest guest interaction is very important, too. Moreover, the electrostatic interaction has been found to be the most important contributor to the total interaction energy in the TMB + guest system.     

Synthesis and helical conformation of poly(N‐propargylamides) carrying L‐aspartic acid in the side chain

Aspartic acid‐based novel poly(N‐propargylamides), i.e., poly[N‐(α‐tert‐butoxycarbonyl)‐L ‐aspartic acid β‐benzyl ester N′‐propargylamide] [poly( 1 )] and poly[N‐(α‐tert‐butoxycarbonyl)‐L ‐aspartic acid α‐benzyl ester N′‐propargylamide] [poly( 2 )] with moderate molecular weights were synthesized by the polymerization of the corresponding monomers 1 and 2 catalyzed with (nbd)Rh⁺[η⁶‐C₆H₅B^?(C₆H₅)₃] in CHCl₃ at 30 °C for 2 h in high yields. The chiroptical studies revealed that poly( 1 ) took a helical structure in DMF, while poly( 2 ) did not in DMF but did in CH₂Cl₂, CHCl₃, and toluene. The helicity of poly( 1 ) and poly( 2 ) could be tuned by temperature and solvents. Poly( 2 ) underwent solvent‐driven switch of helical sense, accompanying the change of the tightness. © 2005 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 43: 5168–5176, 2005     

Excess enthalpies of binary mixtures of 2-ethyl-1-butanol with hexane isomers

Molar excess enthalpies, measured at 298.15 K in a flow microcalorimeter, are reported for binary mixtures of 2-ethyl-1-butanol with the five isomeric hexanes. The results are compared with previously published excess enthalpies for mixtures of 1-hexanol and 2-methyl-1-pentanol with the same hexane isomers.     

Impairment in S-phase entry of splenocytes of Parp-1 knockout mice

One immediate cellular response to DNA damage is the polyADP-ribosylation reaction by poly(ADP-ribose) polymerase-1 (Parp-1). The importance of Parp-1 has been established in many cellular processes, such as the maintenance of genomic stability, DNA repair and cell-death induction. Here, we established Parp-1^−/− mice of C57BL/6J congenic strain and characterized the role of Parp-1 in cell-cycle progression. In this study, we also improved a method to observe G0/G1 to S-phase transition of splenocytes and bone marrow cells prepared from mice. The cells were cultured and stimulated with mitogens (50 μM ionomycin/1 μM phorbol 12, 13-dibutyrate). We found that addition of a commercially available growth supportive reagent, BM Condimed ^RH1, greatly enhanced the transition of G0/G1 to the S-phase, which was determined by bromodeoxyuridine (BrdU) incorporation to DNA. Using this method, G0/G1 to the S-phase entry was measured using splenocytes derived from Parp-1^−/−, Parp-1^+/− and wild-type (Parp-1^+/+) mice. DNA synthesis in Parp-1^+/+ and Parp-1^+/− splenocytes started from day 1 after addition of mitogens, whereas that in Parp-1^−/− cells started from day 2. The peak of the S-phase was at day 2 in all genotypes and notably DNA synthesis in Parp-1^−/− cells was approximately halved compared to Parp-1^+/+ cells on day 2, 3 and 4. These results suggested that Parp-1 is involved in positive regulation of S-phase entry in quiescent mouse splenocytes.     

Studies on the syntheses of heterocyclic compounds. Part DCXLIV . Catalytic reduction of homoproaporphine related compounds

Hydrogenation of the homoproaporphine (IV) over platinum oxide gave a mixture of the cyclohexanols VIIa and VIIb. In contrast, reduction of IV on palladium provided the cyclo-hexanone VI, which was also obtained from VIIb by oxidation. Treatment of the cyclohexanols VIIa and VIIb under hydrogen on platinum oxide afforded the same mixture of VIIa and VIIb.