Direct probing of zwitterion formation in unsolvated peptides

Molecular beam electric deflection measurements have been used to determine electric susceptibilities for small unsolvated alanine-based peptides. The electric susceptibility provides information about the charge distribution within the peptide and can be used to distinguish between zwitterionic and canonical forms. Measured electric susceptibilities for WAn peptides (n = 1-5) are similar to those for capped Ac-WAn-NH2 peptides (which cannot form zwitterions). Susceptibilities calculated using a simulated tempering-based approach are substantially larger for the zwitterionic form than for the canonical form. The measured susceptibilities are in good agreement with those calculated for the canonical form. For the larger peptides, the lowest potential energy structure found in the simulations is hairpin-like, while the lowest free energy structure found at room temperature is extended. The zwitterionic form is constrained by intramolecular interactions which make it entropically unfavorable.     

Evaluation and validation of the ABI 3700, ABI 3100, and the MegaBACE 1000 capillary array electrophoresis instruments for use with short tandem repeat microsatellite typing in a forensic environment

The demand for high-throughput DNA profiling has increased with the introduction of national DNA databases and has led to the development of automated methods of short tandem repeat (STR) profile production; however, a potential bottleneck still exists at the gel electrophoresis stage. Capillary electrophoresis sequencers capable of processing 96 samples with considerably reduced manual intervention are now available. In this paper, we compare the ABI Prism 377 slab-gel sequencer currently used by the Forensic Science Service with three leading capillary array electrophoresis instruments: the ABI Prism 3700, the Amersham MegaBACE 1000 and the 16-capillary ABI Prism 3100. We describe the experiments used to evaluate and validate these platforms for forensic use with the STR multiplex Ampf/STR SGMplus [1, 2], along with comparative data from the ABI Prism 377 sequencer.     

Release of adenosine by C1300 neuroblastoma cells in tissue culture

Previous work in our laboratory led us to postulate that N2a cells release adenosine into growth medium, where it acts at the extracellular adenosine receptors to modulate the sensitivity of the cells to the cyclic AMP-elevating effect of adenosine [Green, RD, J Pharmacol Exp Ther 201:610, 1977]. We have now devised a high-performance liquid chromatographic (HPLC) procedure capable of quantitating the concentrations of adenosine in cells and tissue culture media. Growth media of N2a cells and a variant of N2a cells deficient in hypoxanthine-guanine phosphoribosyltransferase (HGPRT-) contain 10-20 nM adenosine, while that of a variant deficient in adenosine kinase (AK-) is elevated severalfold. It appears that the concentration of adenosine in growth media is determined by both the rate at which it is released by cells into the medium and the rate at which it is metabolized by adenosine deaminase present in the serum in the growth medium. Both N2a and AK- cells release considerable amounts of adenosine into serum-free medium (SFM) over a short period. Adenosine release is greater from AK- cells and is accelerated by erythro-9-(2-hydroxy-3-nonyl)-adenine (EHNA), a potent adenosine deaminase inhibitor. This accelerated release is retarded by dipyridamole and homocysteine. Surprisingly, dipyridamole and 4-(3-butoxy-4-methoxybenzyl)-2-imidazolidinone (Ro 20 1724), a potent phosphodiesterase inhibitor, stimulate basal adenosine release from N2a but not from AK- cells. It remains to be determined if this is due to an effect of these compounds on adenosine kinase. These results give further support for the hypothesis that adenosine in growth medium modulates the sensitivity of the cells to the cyclic AMP-elevating affect of adenosine, and furthermore they suggest that adenosine in growth media may tonically stimulate adenylate cyclase and affect processes controlled by the cyclic AMP:cyclic AMP-dependent protein kinase system.     

Diisophorone and related compounds—II: 1-Alkoxy- and 1-carboxy-diisophorane derivatives

The acid catalysed interaction in dioxan of trialkyl orthoformates with diisophor-2(7)-en-ol-3-one, diisophor-2(7)-en-ol, and their bisnor-homologues, provides the corresponding 1-alkoxy-compounds. Their structure is established by the identity of -methoxydiisophor-2(7)-en-3-one obtained by this method, and by the action of sodium methoxide on 1-chlorodiisophor-2(17)-en-3-one. The latter is regenerated from 1-methoxy(or ethoxy) diisophor-2(7)-en-3-one by the action of stannic chloride-acetyl chloride. Catalytic hydrogenation reduces the 3-keto-function in 1-alkoxydiisophor-2(7)-en-3-ones to a methylene unit; simultaneous removal of the 1-alkoxy-group in the case of the 1-isopropoxy-homologue yields the penultimate parent hydrocarbon of this series, diisophor-2(7)-ene.The combined action of silver sulphate and formic acid in concentrated sulphuric acid on 1-chlorodiisophor-2(7)-en-3-one (and its bisnor-homologue) produces the corresponding 1-carboxylic acids. These are also obtainable by the hydrolysis of the 1-cyano-compound, and are esterifiable by the standard methods.     

Photoelectron spectra of substituted benzenes

Photoelectron spectra of several substituted dimethylanilines, nitrobenzenes, acetophenones and nitrosobenzenes have been studied with a view to examine the electronic effects of substituents on the various φ and n levels. The results are discussed in the light of molecular orbital calculations and electronic absorption spectra. Correlation of substituent effects on the IE's with π-electron densities and Hammett substituent constants has enabled rationalization of all available data on mono- and disubstituted benzenes. The IE's generally increase with the electron-withdrawing power of the substituents.     

Synthesis, structure, and theoretical study of the nonclassical [CuTe(7)](3-) anion

The compound [PPh(4)](2)[NEt(4)][CuTe(7)] has been synthesized from the reaction of CuCl with a polytelluride solution in dimethylformamide at room temperature. The compound crystallizes with two formula units in the triclinic space group P(-)1 in a cell with dimensions a = 8.9507(18) A, b = 14.714(3) A, and c = 23.277(5) A and alpha= 86.32(3) degrees, beta= 80.17(3) degrees, and gamma= 75.63(3) degrees (T = -120 degrees C). Ab initio calculations indicate that the nonclassical [CuTe(7)](3)(-) anion is the result of joining Te(3)(2-) and [CuTe(4)](1-) fragments through donor-acceptor interactions.     

A SAPO-11 Silicoaluminophosphate Molecular Sieve with Stable Crystal Structure

A SAPO-11 silicoaluminophosphate molecular sieve with stable crystal structure was synthesized for the first time. After removing template by calcination, its crystal space group still retains Icm2 which the as-synthesized has. The catalyst deriving from the present SAPO-I 1 materials shows higher isomerization selectivity and higher paraffin hydroisomerization yield than those reported elsewhere.     

Changes in calmodulin main-chain dynamics upon ligand binding revealed by cross-correlated NMR relaxation measurements

The fast dynamics of protein backbones are often investigated by nuclear magnetic relaxation experiments that report on the degree of spatial restriction of the amide bond vector. By comparing calmodulin in the peptide-bound and peptide-free states with these classical methods, we observe little difference in the dynamics of the polypeptide main chain (average order parameter decrease of 0.01 unit upon binding). However, when using NMR methods that monitor the mobility of the CO-Calpha bond vector, we reveal a significant reduction of dynamics of the protein main chain (average order parameter decrease of 0.048 units). Previous investigations have suggested that the side-chain dynamics is reduced by an average of 0.07 order parameter units upon ligand binding (Lee, A. L.; Kinnear, S. A.; Wand, A. J. Nat. Struct. Biol. 2000, 7, 72-77). The current findings suggest that the change of the CO-Calpha bond vector dynamics is intermediate between the changes in NH and side-chain dynamics and report a previously undetected loss of main-chain entropy. Weak site-to-site correlations between the different motional indicators are also observed.     

Synthesis of a homotrifunctional conjugation reagent based on maleimide chemistry

A novel homotrifunctional conjugation reagent, 1,3,5-tris-(N-maleimidomethyl)benzene has been synthesized in high yield with minimum purification. The reactivity of this compound was examined by using l-cysteine as a nucleophile.     

Multidentate carborane-containing Lewis acids and their chemistry: mercuracarborands

Macrocyclic Lewis acidic hosts with structures incorporating electron-withdrawing icosahedral carboranes and electrophilic mercury centers bind a variety of electron-rich guests. These compounds, the so-called mercuracarborands, are synthesized by a kinetic halide ion template effect that affords tetrameric cycles or in the absence of halide ion templates, cyclic trimers. Both types of mercuracarborands form stable host–guest complexes with anionic and neutral electron-rich molecules. The multidentate structure of mercuracarborand hosts has made these unique molecules ideal for catalytic and ion-sensing applications as well as for the assembly of supramolecular architectures.