Chemical Reactivity of Oxo‐ and Aza‐γ‐lactam Rings

Different mechanisms for the alkaline hydrolysis of oxo and aza‐γ‐lactam rings have been studied by ab initio calculations at the MP2/6‐31+G*//MP2/6‐31+G* and B3LYP/6‐31+G*//B3LYP/6‐31+G* levels. The tetrahedral intermediate can undergo two different reactions, the cleavage of the C₂−N₂ bond (the classical mechanism) and the cleavage of the C₂−X₆ bond (X=O, N). Both compounds present similar energy barriers for the classical fragmentation, and show considerably lower barriers for the alternative mechanism. Because of this reactivity, the compounds studied are expected to be β‐lactamase inhibitors.     

Effects of Mechanical Stretching on the Properties of Conjugated Polymers: Case Study for MEH-PPV and P3HT Oligomers

Nowadays, the development of new materials for applications in flexible optoelectronic devices is one of the main frontiers of science. However, in order to improve the applicability and durability of such devices, a deeper understanding of the effects induced by mechanical deformations on the properties of their components is still necessary. In this sense, in the present study, it is evaluated the effect of mechanical stretching in the structural, electronic, and optical responses of two widely investigated organic polymers with great technological interest: poly(2-methoxy,5-(2′-ethylhexyloxy)-1,4-phenylene vinylene) and poly(3-hexylthiophene-2,5-diyl). Hartree–Fock and density functional theory electronic structure calculation methods were employed for the study of oligomeric structures subjected to increasing stretch levels along the polymerization axis. The results show a dependence of the polymer properties with the mechanical deformation, allowing to identify distinct response regimes according to the main chain stretching. In particular, it is noticed that large stretches lead to nonfunctional devices, mainly due to the localization of the frontier orbitals and degradation of optoelectronic properties. In addition, it was also identified that very small deformations can lead to some interesting optoelectronic responses, which could indicate an alternative route for the design of organic devices via mechanical processes. © 2018 Wiley Periodicals, Inc. J. Polym. Sci., Part B: Polym. Phys. 2018 , 56, 1413–1426     

The thermal behaviour of nickel, copper and zinc complexes with the Schiff bases cis- and trans-N,N′-bis(salicylidene)-1,2-ciclohexadiamine (Salcn)

The Schiff base complexes were prepared and characterised by UV, IR and NMR (¹H and ¹³C) spectroscopy, elemental analysis and X-ray powder diffractometry. Free ligands and some new complexes were submitted to thermal analysis (TG and DSC) under dynamic air atmosphere. The differences in the decomposition profiles were related to the structure of isomers and decomposition intermediates were characterised according to their X-ray diffraction pattern.     

Inversion of simulated positron annihilation lifetime spectrum using a neural network

Inversion of positron annihilation lifetime spectroscopy, based on a neural network Hopfield model, is presented in this paper. From a previous reported density function for lysozyme in water a simulated spectrum, without the superposition of statistical fluctuation and spectrometer resolution effects, was generated. These results were taken as the exact results from which the neural network was trained. The precision of the inverted density function was analyzed taking into account the number of neurons and the learning time of the neural network. A fair agreement was obtained when comparing the neural network results with the exact results. For example, the maximum of the density function, with a precision of 0.4% for the percentual relative error, was obtained for 64 neurons.     

Detection and characterization of hydroxyl radical adducts by mass spectrometry

The study of the influence of free radicals in the biological process depends primarily on the capacity to detect these reactive species. In this work we have studied the application of mass spectrometry to the identification of hydroxyl radical species. The detection and identification by collisional activation mass-analyzed ion kinetic energy spectrometry (CA-MIKES) of a spin adduct of DMPO with the hydroxyl radical [(DMPO + O) + H]+ (m/z 130) has demonstrated that mass spectrometry can be a powerful tool in the detection and identification of spin adducts of DMPO with hydroxyl radical species. We were also able to detect the capture of secondary free radicals using ethanol by detecting and identifying the corresponding adduct [(DMPO + ethanol) + H]+. Other spin adducts have also been detected and identified. We consider that the use of mass spectrometry is a relevant technique for the detection of free hydroxyl radicals, especially in complex mixtures, since mass spectrometry is able to discriminate these adducts in such situations. Moreover, using this approach, it was possible to identify new spin adducts.     

Solution conformations for the flexible 1-chloro-1,1-difluoro-2-pentanol unveiled using multinuclear magnetic resonance

The preferred conformations of a small polyfunctional molecule containing fluorine, chlorine and hydroxyl groups, the 1-chloro-1,1-difluoro-2-pentanol (CDP), were completely elucidated using ¹H, ¹³C and ¹⁹F NMR in three different solvents. While the Cl-C-C-O dihedral angle was asserted using coupling constant data for the diastereotopic fluorines, the Et-C-C-O torsional angle was analyzed by means of ¹H NMR spectra with selective irradiation of the diastereotopic hydrogens and fluorines. In addition, unusual couplings of the hydroxyl hydrogen with a diastereotopic hydrogen and fluorines provided information on the O-H orientation. The behavior of ¹J_C,F when the solvents varied agrees with a weak F???HO intramolecular hydrogen bond. These findings were corroborated, and the governing interactions rationalized with the aid of high level CCSD(T) theoretical calculations. Noteworthy, hyperconjugation involving the electron-acceptor σ*_C-Cl orbital drives the conformational equilibrium rather than the fluorine gauche effect.     

Structural and Vibrational Characterization of the Chromophore Binding Site of Bacterial Phytochrome Agp1

Agp1 is a prototypical bacterial phytochrome from Agrobacterium fabrum harboring a biliverdin cofactor which reversibly photoconverts between a red‐light‐absorbing (Pr) and a far‐red‐light‐absorbing (Pfr) states. The reaction mechanism involves the isomerization of the bilin‐chromophore followed by large structural changes of the protein matrix that are coupled to protonation dynamics at the chromophore binding site. Histidines His250 and His280 participate in this process. Although the three‐dimensional structure of Agp1 has been solved at high resolution, the precise position of hydrogen atoms and protonation pattern in the chromophore binding pocket has not been investigated yet. Here, we present protonated structure models of Agp1 in the Pr state involving appropriately placed hydrogen atoms that were generated by hybrid quantum mechanics/molecular mechanics‐ and electrostatic calculations and validated against experimental structural‐ and spectroscopic data. Although the effect of histidine protonation on the vibrational spectra is weak, our results favor charge neutral H250 and H280 both protonated at Nε. However, a neutral H250 with a proton at Nε and a cationic H280 may also be possible. Furthermore, the present QM/MM calculations of IR and Raman spectra of Agp1 containing isotope‐labeled BV provide a detailed vibrational assignment of the biliverdin modes in the fingerprint region.     

Characterization of <Emphasis Type="Italic">Anemopsis californica</Emphasis> essential oil–β-cyclodextrin inclusion complex as antioxidant prolonged-release system

Antioxidant activity is a property of Anemopsis californica essential oil (ACO). However, ACO possesses volatile compounds that provide strong flavors and that are susceptible to degradation, complicating its application. An alternative is its encapsulation in a β-cyclodextrin (β-CD) matrix. Therefore, the characterization of β-CD–ACO inclusion complexes as an antioxidant prolonged-release system was the objective of this work. The ACO yield was 8.26 mg/g of dry sample. Elemicin (EL) (68.9%) and methyleugenol (ME) (11.7%) comprised the majority compounds identified by gas chromatography (GC). The β-CD–ACO inclusion complex, with a 90:10 ratio based on the precipitation technique, exhibited best percentage of recovery, greater ACO retention, and major antioxidant capacity determined by DPPH [2,2-diphenyl-1-picrylhydrazyl] and ABTS [2,2′-azino-bis-(3 ethylbenzothiazoline-6-sulfonic acid)] assays. Antioxidant activity was maintained during encapsulation. Free β-CD and β-CD:ACO presented the hysteresis phenomenon according to water sorption isotherms. A prolonged-release system was studied using different relative humidities (0, 33, 66, 96 and 100%). EL demonstrated 93.75% of release in highest relative humidity, while ME released completely. These results suggest application of the β-CD–ACO complex in systems in which it can be passively released and in controlled form, as in active food or drug packaging.     

Theoretical study of the stability and properties of magic numbers (m = 5, n = 2) and (m = 6, n = 3) of bimetallic bismuth‐copper nanoclusters; Bim Cun

Inspired by the experimental discovery of magic numbers we present a first study using density functional theory for the structure and properties of neutral and cationic Bi₆Cu₃ and Bi₅Cu₂ clusters. Our results confirm predictions based on Wade's rules. The closed electron shells, characteristic of cationic clusters help impose enhanced stability, while also complying with Wade's rules. Charge distribution analysis, as well as electrostatic potential maps show that in almost all cases, Bi atoms donate charges to Cu atoms. According to the analysis of condensed Fukui indices, Cu atoms inside both clusters are not reactive. Contrastingly, Bi atoms are reactive and may be targeted by different types of attack. This study of the electronic properties may thus help to determine experimental strategies with the capacity to enhance the synthesis of catalysts.