Identification of hydroxyl radical oxidation products of N‐hexanoyl‐homoserine lactone by reversed‐phase high‐performance liquid chromatography coupled with electrospray ionization tandem mass spectrometry

A reversed‐phase high‐performance liquid chromatography/electrospray tandem mass spectrometry method was developed for the characterization of hydroxyl radical oxidation products of N‐hexanoyl‐homoserine lactone (C6‐HSL), a member of the N‐acylhomoserine lactone (AHL) class of microbial quorum‐sensing signaling molecules identified in many Gram‐negative strains of bacteria. Six products were identified: four with molecular weight (MW) of 213 and two with MW of 260. The characteristic product ions formed through collision‐induced dissociation (CID) provided diagnostic structural information. One of the photolysis products was determined to be N‐(3‐oxohexanoyl)homoserine lactone (3OC6‐HSL), a highly active quorum‐sensing signal, by comparison with a reference standard. Three structural isomers with the same mass as 3OC6‐HSL were identified as acyl side chain oxidized C6‐HSL (keto/enol functionalized) by accurate mass measurement and the structures of these products were proposed from CID spectral interpretation. Two structural isomers formed from concurrent oxidation and nitration of C6‐HSL were also observed and their structures were postulated based on CID spectra. In addition to the six hydroxyl radical oxidation products formed from the C6‐HSL precursor, five additional compounds generated from combined oxidation and lactonolysis of C6‐HSL were identified and structures were postulated. Copyright © 2009 John Wiley & Sons, Ltd.     

Simulations of germanium epitaxial growth on the silicon (1 0 0) surface incorporating intermixing

We present kinetic lattice Monte Carlo simulations of Ge deposition onto a reconstructed Si (1 0 0) surface. We account for the exchange of Ge with Si atoms in the substrate, considering two different exchange mechanisms: a dimer exchange mechanism whereby Ge–Ge dimers on the surface become intermixed with substrate Si atoms, and the exchange of Ge atoms below the surface to relieve misfit strain. We examine how Si–Ge exchange affects the interface between the materials when the growth simulations are done at different temperatures.     

Bicarbonate as a proton donor in catalysis by Zn(II)- and Co(II)-containing carbonic anhydrases.

Catalysis of (18)O exchange between CO(2) and water catalyzed by a Co(II)-substituted mutant of human carbonic anhydrase II is analyzed to show the rate of release of H(2)(18)O from the active site. This rate, measured by mass spectrometry, is dependent on proton transfer to the metal-bound (18)O-labeled hydroxide, and was observed in a site-specific mutant of carbonic anhydrase II in which a prominent proton shuttle residue His64 was replaced by alanine, which does not support proton transport. Upon increasing the concentration of bicarbonate, the rate of release of H(2)(18)O increased in a saturable manner to a maximum of 4 x 10(5) s(-)(1), consistent with proton transfer from bicarbonate to the Co(II)-bound hydroxide. The same mutant of carbonic anhydrase containing Zn(II) had the rate of release of H(2)(18)O smaller by 10-fold, but rate of interconversion of CO(2) and HCO(3)(-) about the same as the Co(II)-containing enzyme. These data as well as solvent hydrogen isotope effects suggest that the bicarbonate transferring the proton is bound to the cobalt in the enzyme. The enhancement of (18)O exchange caused by increasing bicarbonate concentration during catalysis by the Zn(II)-containing carbonic anhydrase from the archaeon Methanosarcina thermophila suggests that a very similar mechanism for proton donation by bicarbonate occurs with this wild-type enzyme.     

Rubber networks containing unattached macromolecules. IV. Stress relaxation in end-linked polybutadiene with unattached styrene-butadiene copolymer

Stress relaxation has been studied in networks of dihydroxy-terminated polybutadiene (mostly cis:trans:vinyl = 34:40:26) crosslinked by triphenyl methane-4,4′,4″-triisocyanate and containing about 9.5% by weight of unattached linear random styrene-butadiene copolymer with various molecular weights (from 1.4 to 3.3 × 10⁵) and with styrene content and butadiene microstructure chosen to match the average solubility parameter of the end-linked network. Stress relaxation measurements were made also on networks containing no unattached species and containing 9.3% hydrocarbon oil, and on the various uncrosslinked linear polymers. The stretch ratio was 1.25 and the Young's relaxation modulus was calculated from the neo-Hookean stress-strain relation. For the uncrosslinked linear polymers, the relaxation modulus E₁₁(t) corresponds to a rather narrow distribution of relaxation times whose magnitudes were approximately proportional to the 3.4 power of viscosity-average or weight-average molecular weight; for one polymer, the time dependence agreed closely with the prediction of the Doi-Edwards theory modified for a small degree of molecular weight distribution. The disengagement times calculated from the Doi-Edwards theory as modified by Graessley appeared to be of the correct order of magnitude. The contribution of the unattached species in the networks E₁(t) was calculated by difference; after multiplication by (1?v)^?1, where v₂ is the volume fraction of network, and correction for the difference in monomeric friction coefficient associated with the difference in fractional free volume in the two environments, E₁(t) was compared with E₁₁(t) for each linear polymer. The relaxation was slower in the network than in the uncrosslinked polymer by about an order of magnitude, but the form of the relaxation modulus was similar in both environments except for two linear polymers for which the relaxation in the network became very much slower at long times. This behavior appeared to be correlated with a broader molecular weight distribution.     

Optical and intervalley scattering in quantized inversion layers in semiconductors

The momentum relaxation time for scattering of electrons in quantized levels of an inversion layer on a semiconductor surface is calculated for interactions via optical and intervalley phonons. A selection rule is found which prohibits transitions between subbands belonging to the same valley or set of valleys, at least in the zero order to which these scattering processes may occur. Relaxation times for the zero-order interaction and the first-order interaction are obtained for intervalley phonons. The results are applied to the case of a (100)-silicon surface, with electrons in the three lowest subbands (with energy levels E₀, E₁, E'₀) of the two sets of valleys. Agreement with the experimental data of Fang and Fowler is good when the combined effects of intervalley and acoustic scattering are considered.     

Rubber networks containing unattached macromolecules. I. Linear viscoelastic properties of the system butyl rubber–polyisobutylene

Mixtures of butyl rubber with polyisobutylene (molecular weights 0.055 and 2.3 × 10⁶) up to 50% by weight were crosslinked by sulfur, leaving the polyisobutylene molecules free to reptate in the butyl rubber network. Linear viscoelastic properties were measured in shear creep for periods up to 5 × 10⁵ sec at 25°C and oscillating shear deformations from 0.1 to 3 Hz, at temperatures from 2 to 63°C. Comparison with the properties of a butyl rubber crosslinked without polyisobutylene showed contributions to creep and mechanical loss attributable to the reptating species. Comparison with the properties of polyisobutylene (higher molecular weight) showed that the relaxation times associated with the reptating species in the upper part of the terminal zone are the same for different polyisobutylene contents (25% and 50%) and for 100% polyisobutylene in which no permanent network is present; their contributions to modulus appear to be proportional to the volume fraction of polyisobutylene to a power of about 2/3. The time required in stress relaxation for the portion of the modulus attributable to the reptating species to decay to half its plateau value is, based on the two molecular weights employed, proportional to the polyisobutylene molecular weight to the third power. The magnitude of the associated mechanical loss and its location on the frequency scale can thus be controlled independently.     

Anisotropic intrinsic spin Hall effect in quantum wires

We use numerical simulations to investigate the spin Hall effect in quantum wires in the presence of both Rashba and Dresselhaus spin-orbit coupling. We find that the intrinsic spin Hall effect is highly anisotropic with respect to the orientation of the wire, and that the nature of this anisotropy depends strongly on the electron density and the relative strengths of the Rashba and Dresselhaus spin-orbit couplings. In particular, at low densities, when only one subband of the quantum wire is occupied, the spin Hall effect is strongest for electron momentum along the [N110] axis, which is the opposite of what is expected for the purely 2D case. In addition, when more than one subband is occupied, the strength and anisotropy of the spin Hall effect can vary greatly over relatively small changes in electron density, which makes it difficult to predict which wire orientation will maximize the strength of the spin Hall effect. These results help to illuminate the role of quantum confinement in spin-orbit-coupled systems, and can serve as a guide for future experimental work on the use of quantum wires for spin-Hall-based spintronic applications.     

Synthesis of alpha-trifluoromethylated nitrogen heterocycles

The syntheses of various alpha-trifluoromethylated nitrogen heterocycles have been achieved from readily available alpha-(trifluoromethyl)homoallylamine through a ring-closing metathesis.