On the evaluation of strategies for branching bandit processes

Glazebrook [1] has given an account of improved procedures for strategy evaluation for resource allocation in a stochastic environment. These methods are extended in the paper in such a way that they can be applied to problems which, for example, have precedence constraints and/or an arrivals process of new jobs. Theoretical results, backed up by numerical studies, show that quasi-myopic heuristics often perform well.     

Ultraviolet C radiation influences the robustness of RNA integrity measurement

The analytical and clinical validity of analyses of RNA samples destined for clinical diagnosis and therapeutic management is directly impacted by RNA quality. RNA is affected by heat, enzymatic degradation, and Ultraviolet (UV) light. RNA from three eukaryotic cell lines was degraded by heat, RNase, or UV light. RNA integrity values obtained with the benchmark Agilent Bioanalyzer 2100 system were compared with those from the more recent QIAxcel Advanced system. The application of this novel method has allowed us to unravel differences between RNA biophysical and biochemical degradation modes. Agilent RNA integrity number (RIN) and QIAxcel RIS were comparable in heat‐degraded and RNase III‐degraded RNA. Agilent RIN and QIAxcel RIS were comparable at a RIN decision level of 7 in UV‐degraded RNA but not overall. The QIAxcel RIS method was more precise than Agilent RIN for RIN<8, while the inverse was true for RIN≥8. Greater degradation of mRNA and rRNA in UV‐damaged samples hampered the Agilent RIN calculation algorithm. Overall, RIS was more robust than RIN for assessing RNA integrity. The ΔΔCt‐values for heat‐ and UV‐degraded RNA samples showed slightly higher correlation with RIS than with RIN. RNA integrity can be used to categorize RNA samples for suitability for downstream gene expression analyses, independently of the RNA degradation mechanism. The new method QIAxcel is more robust and therefore allows more accurate categorization of compromised RNA samples.     

Simultaneous analysis of 13C‐glutathione as its dimeric form GSSG and its precursor [1‐13C]glycine using liquid chromatography/isotope ratio mass spectrometry

Determination of glutathione kinetics using stable isotopes requires accurate measurement of the tracers and tracees. Previously, the precursor and synthesized product were measured with two separate techniques, liquid chromatography/isotope ratio mass spectrometry (LC/IRMS) and gas chromatography/combustion/isotope ratio mass spectrometry (GC/C/IRMS). In order to reduce sample volume and minimize analytical effort we developed a method to simultaneously determine ¹³C‐glutathione as its dimeric form (GSSG) and its precursor [1‐¹³C]glycine in a small volume of erythrocytes in one single analysis. After having transformed ¹³C‐glutathione into its dimeric form GSSG, we determined both the intra‐erythrocytic concentrations and the ¹³C‐isotopic enrichment of GSSG and glycine in 150 µL of whole blood using liquid chromatography coupled to LC/IRMS. The results show that the concentration (range of µmol/mL) was reliably measured using cycloleucine as internal standard, i.e. with a precision better than 0.1 µmol/mL. The ¹³C‐isotopic enrichment of GSSG and glycine measured in the same run gave reliable values with excellent precision (standard deviation (sd) <0.3‰) and accuracy (measured between 0 and 5 APE). This novel method opens up a variety of kinetic studies with relatively low dose administration of tracers, reducing the total cost of the study design. In addition, only a minimal sample volume is required, enabling studies even in very small subjects, such as preterm infants. Copyright © 2009 John Wiley & Sons, Ltd.     

Gas chromatography/tandem mass spectrometry analysis of alkylresorcinols in red blood cells

Erythrocyte alkylresorcinols (5‐alkyl‐1,3‐dihydroxybenzenes) are potential biomarkers of wholegrain wheat and rye intake. However, their high‐throughput quantitative analysis by gas chromatography/mass spectrometry (GC/MS) is hindered by the time‐consuming sample preparation and, more importantly, by interfering compounds that still remain after sample cleanup. In the present work we describe a gas chromatography/tandem mass spectrometry (GC/MS/MS) method for the rapid and reliable quantification of alkylresorcinols in erythrocyte samples. The performance of the GC/MS/MS method is compared with that of GC/MS. The main characteristics of the method are: lower limits of detection: 2–10 µg/L standard solution; lower limits of quantification: 6–30 µg/L standard solution; linearity coefficients: 0.9611–0.9888; linear ranges: 2–20 µg/L in erythrocytes; and intra‐day precisions (n = 6): 4–13% at endogenous analyte levels in non‐spiked erythrocytes. Tandem mass spectrometry showed greatly improved selectivity over single‐stage mass spectrometry in the case of erythrocyte samples, eliminating all interferences detectable in single‐stage MS and enabling simple peak integration for quantification. Moreover, increased selectivity resulted in GC separation speeded up by a factor of two, allowing the duplicate analysis of over 40 samples per day. This GC/MS/MS method is suggested as an improved alternative to GC/MS for the quantification of alkylresorcinols in erythrocytes for assessing wholegrain wheat and rye intake. Copyright © 2008 John Wiley & Sons, Ltd.     

Psychometric functions for level discrimination and the effects of signal duration in the goldfish (Carassius auratus): psychophysics and neurophysiology.

Classical conditioning of respiration was used to obtain psychometric functions for pulsed tone level discrimination in the goldfish (Carassius auratus). Conditioned respiratory suppression is a graded response that has some properties of a confidence rating measure. These properties were used to obtain receiver operating characteristics (ROC) and psychometric functions using a blocked method of constant stimuli. Empirical ROCs and neurometric functions were also obtained for single auditory-nerve fibers using spike count as the decision variable in order to evaluate a simple rate code for level discrimination. Psychometric and neurometric functions for level discrimination are similar in showing the same general form (summarized by Weibull functions) that is independent of signal duration. The lower slope of neurometric functions compared with behavioral functions for level discrimination is in accord with similar data on sound detection and vision in nonhuman mammals. Both neural and psychophysical level discrimination thresholds decline with increasing duration (20 to 320 ms), with similar slopes except at short signal durations (20 to 50 ms). At these durations, the animal's use of a channel-selection strategy and neural information following stimulus offset could reduce the difference between neural and psychophysical thresholds. The slopes of the neural and psychophysical duration functions are similar to those for human observers, but the majority of auditory-nerve fibers sampled have lower level discrimination thresholds than the behaving animal. Since human observers perform better than the majority of neurons in level discrimination, well-trained human listeners may be able to select channels with superior information, or to combine information across channels in ways that the goldfish and other animals do not. In general, one is encouraged to believe that neural mechanisms need not be more complex or sensitive than those considered here to account for pure-tone level discrimination in fishes, humans, and other vertebrates.     

On the application of spin-fluctuation theory to superfluid 3He

Spin-fluctuation theory, modified to include non-paramagnon effects, is shown to be capable of yielding quantitative results for the pairing interaction and the Anderson-Brinkman parameter δ in a natural manner.     

Soft π−p and pp elastic scattering in the energy range 30 to 345 GeV

Differential cross sections for π^?p and pp elastic scattering have been measured at incident momenta ranging from 30 to 345 GeV and in the t range 0.002 (GeV/c)² ? |t| ? 0.04 (GeV/c)². From the analysis of the data, the ratio ? (t = 0) of the real to the imaginary parts of the forward scattering amplitude was determined together with the logarithmic slope b of the diffraction cone.The results on the real parts confirm the validity of the forward dispersion relations at high energies. Using the dispersion relations, it was shown that the experimental data on ?_{π?p(t = 0)} require a continuous rise of the total πp cross sections, at least up to the energy of 2000 GeV, thus revealing a close similarity in high-energy behaviour of πp and pp interactions.The results on the slope parameters from this experiment together with the analysis of the available world data demonstrate that the existing experimental data are consistent with the hypothesis of a universal shrinkage of the hadronic diffraction cone at high energies. The value of the asymptotic shrinkage parameter α_p^′ was found to be independent of the kind of the incident hadron and of the momentum transfer in the t range |t| ? 0.2 (GeV/c)² : 2α_{p^′ = ± 3 (GeV/c)^?2}.