Voltammetric Reductions of Ring-Substituted Acetophenones. 2. A Senior-Level Experiment Requiring Classification of an Electrochemical Mechanism as Stepwise or Concerted

An experiment suitable for upper-level undergraduates in which they determine the characteristics of a chemically coupled electron transfer (EC) mechanism is described. Students examine the free-energy barrier between an unstable radical anion and the products of its decomposition for ring-substituted and alpha-substituted acetophenones, acetanilides, and alkyl halides. Digital simulation is used to estimate the value of the standard potential, E°. Calculation of the electrochemical transfer coefficient, , allows a determination of whether the electron transfer occurs in a single step (concerted) or follows the generation of the intermediate radical anion (stepwise).     

Surface tailoring for controlled protein adsorption: effect of topography at the nanometer scale and chemistry

Protein adsorption behavior is at the heart of many of today's research fields including biotechnology and materials science. With understanding of protein-surface interactions, control over the conformation and orientation of immobilized species may ultimately allow tailor-made surfaces to be generated. In this contribution protein-surface interactions have been examined with particular focus on surface curvature with and without surface chemistry effects. Silica spheres with diameters in the range 15-165 nm with both hydrophilic and hydrophobic surface chemistries have been used as model substrates. Two proteins differing in size and shape, bovine serum albumin (BSA) and bovine fibrinogen (Fg), have been used in model studies of protein binding with detailed secondary structure analysis being performed using infrared spectroscopy (IR) on surface-bound proteins. Although trends in binding affinity and saturation values were similar for both proteins, albumin is increasingly less ordered on larger substrates, while fibrinogen, in contrast, loses secondary structure to a greater extent when adsorbing onto particles with high surface curvature. These effects are compounded by surface chemistry, with both proteins becoming more denatured on hydrophobic surfaces. Both surface chemistry and topography play key roles in determining the structure of the bound proteins. A model of the binding characteristics of these two proteins onto surfaces having differing curvature and chemistry is presented. We propose that properties of an adsorbed protein layer may be guided through careful consideration of surface structure, allowing the fabrication of materials/surface coatings with tailored bioactivity.     

Spectroscopy and reactivity of size-selected Mg+ -ammonia clusters

Photodissociation spectra for mass-selected Mg(+)(NH(3))(n) clusters for n=1 to 7 are reported over the photon energy range from 7000 to 38 500 cm(-1). The singly solvated cluster, which dissociates primarily via a N-H bond cleavage, exhibits a resolved vibrational structure corresponding to two progressions in the intracluster Mg(+)-NH(3) modes. The addition of the second, third, and fourth solvent molecules results in monotonic redshifts that appear to halt near 8500 cm(-1), where a sharp feature in the electronic spectrum is correlated with the formation of a Mg(+)(NH(3))(4) complex with T(d) symmetry and the closing of the first solvation shell. The spectra for the clusters with 5 to 7 solvent molecules strongly resemble that for the tetramer, suggesting that these solvent molecules occupy a second solvation shell. The wavelength-dependent branching-ratio measurements show that increasing the photon energies generally result in the loss of additional solvent molecules but that enhancements for a specific solvent number loss may reveal special stability for the resultant fragments. The majority of the experimental evidence suggests that the decay of these clusters occurs via the internal conversion of the initially excited electronic states to the ground state, followed by dissociation. In the case of the monomer, the selective cleavage of a N-H bond in the solvent suggests that this internal-conversion process may populate regions of the ground-state surface in the vicinity of an insertion complex H-Mg(+)-NH(2), whose existence is predicted by ab initio calculations.     

Tris-2-(3-methylindolyl)phosphine as an anion receptor

A C3-symmetric phosphine with indolyl substituents has been synthesized that demonstrates the capability to bind anions through the indole NH sites and coordinate metal centres through the phosphorus centre.     

Machine learning and semi-empirical calculations: a synergistic approach to rapid,accurate, and mechanism-based reaction barrier prediction

Modern QM modelling methods, such as DFT, have provided detailed mechanistic insights into countless reactions. However, their computational cost inhibits their ability to rapidly screen large numbers of substrates and catalysts in reaction discovery. For a C–C bond forming nitro-Michael addition, we introduce a synergistic semi-empirical quantum mechanical (SQM) and machine learning (ML) approach that allows the prediction of DFT-quality reaction barriers in minutes, even on a standard laptop using widely available modelling software. Mean absolute errors (MAEs) are obtained that are below the accepted chemical accuracy threshold of 1 kcal mol⁻¹ and substantially better than SQM methods without ML correction (5.71 kcal mol⁻¹). Predictive power is shown to hold when the ML models are applied to an unseen set of compounds from the toxicology literature. Mechanistic insight is also achieved via the generation of full SQM transition state (TS) structures which are found to be very good approximations for the DFT-level geometries, revealing important steric interactions in some TSs. This combination of speed, accuracy, and mechanistic insight is unprecedented; current ML barrier models compromise on at least one of these important criteria.

A synergistic approach that combines machine learning with semi-empirical methods enables the fast and accurate prediction of DFT-quality reaction barriers, with mechanistic insights available from semi-empirical transition state geometries.     

Dynamics study of the reaction OH- + C2H2-->C2H- + H2O with crossed beams and density-functional theory calculations

The proton transfer reaction between OH- and C2H2, the sole reactive process observed over the collision energy range from 0.37 to 1.40 eV, has been studied using the crossed beam technique and density-functional theory (DFT) calculations. The center of mass flux distributions of the product C2H- ions at three different energies are highly asymmetric, characteristic of a direct process occurring on a time scale much less than a rotational period of any transient intermediate. The maxima in the flux distributions correspond to product velocities and directions close to those of the precursor acetylene reactants. The reaction quantitatively transforms the entire exothermicity into internal excitation of the products, consistent with an energy release motif in which the proton is transferred early, in a configuration in which the forming bond is extended. This picture is supported by DFT calculations showing that the first electrostatically bound intermediate on the reaction pathway is the productlike C2H- H2O species. Most of the incremental translational energy in the two higher collision energy experiments appears in product translational energy, and provides an example of induced repulsive energy release characteristic of the heavy+light-heavy mass combination.     

Reaction dynamics of OH+(3Sigma-)+C2H2 studied with crossed beams and density functional theory calculations

The reactions between OH+(3Sigma-) and C2H2 have been studied using crossed ion and molecular beams and density functional theory calculations. Both charge transfer and proton transfer channels are observed. Products formed by carbon-carbon bond cleavage analogous to those formed in the isoelectronic O(3P)+C2H2 reaction, e.g., 3CH2 + HCO+, are not observed. The center of mass flux distributions of both product ions at three different energies are highly asymmetric, with maxima close to the velocity and direction of the precursor acetylene beam, characteristic of direct reactions. The internal energy distributions of the charge transfer products are independent of collision energy and are peaked at the reaction exothermicity, inconsistent with either the existence of favorable Franck-Condon factors or energy resonance. In proton transfer, almost the entire reaction exothermicity is transformed into product internal excitation, consistent with mixed energy release in which the proton is transferred with both the breaking and forming bonds extended. Most of the incremental translational energy in the two higher-energy experiments appears in product translational energy, providing an example of induced repulsive energy release.