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61.
Melo A Puga AT Gentil F Brito N Alves AP Ramos MJ 《Journal of chemical information and computer sciences》2000,40(3):559-566
Molecular dynamics is a well-known technique very much used in the study of biomolecular systems. The trajectory files produced by molecular dynamics simulations are extensive, and the classical lossless algorithms give poor efficiencies in their compression. In this work, a new specific algorithm, named byte structure variable length coding (BS-VLC), is introduced. Trajectory files, obtained by molecular dynamics applied to trypsin and a trypsin:pancreatic trypsin inhibitor complex, were compressed using four classical lossless algorithms (Huffman, adaptive Huffman, LZW, and LZ77) as well as the BS-VLC algorithm. The results obtained show that BS-VLC nearly triplicates the compression efficiency of the best classical lossless algorithm, preserving a near lossless behavior. Compression efficiencies close to 50% can be obtained with a high degree of precision, and the maximum efficiency possible (75%), within this algorithm, can be performed with good precision. 相似文献
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63.
Photooxidation of glycated and non‐glycated phosphatidylethanolamines monitored by mass spectrometry
Tânia Melo Eduarda M. P. Silva Cláudia Simões Pedro Domingues M. Rosário M. Domingues 《Journal of mass spectrometry : JMS》2013,48(1):68-78
Phosphatidylethanolamines (PE) are one of the major components of cells membranes, namely in skin and in retina, that are continuously exposed to solar UV radiation being major targets of photooxidation damage. In addition, due to the presence of the free amine group, PE can also undergo glycation, in hyperglycemic conditions which may increase the susceptibility to oxidation. The aim of this study is to develop a model, based on mass spectrometry (MS) analysis, to identify photooxidative degradation of selected PE (POPE: PE 16:0/18:1, PLPE: PE 16:0/18:2, PAPE: PE 16:0/20:4) and glycated PEs due to UV irradiation. Photooxidation products were analysed by electrospray ionization MS (ESI‐MS) and tandem MS (ESI‐MS/MS) in positive and negative mode. Emphasis is placed in the influence of glycation in the generation of distinct photooxidation products. ESI‐MS spectra of PE after UV photo‐irradiation showed mainly hydroperoxy derivatives, due to oxidation of unsaturated fatty acyl chains. Glycated PE gave rise to several new photooxidation products formed due to oxidative cleavages of the glucose moiety, namely between C1 and C2, C2 and C3, and C5 and C6 of this sugar unit. These new products were identified by ESI‐MS/MS in positive mode showing distinct neutral loss depending on the different structure of the polar head group. These new identified advanced glycated photooxidation products may have a deleterious role in the etiology of diabetic retinopathy and in diabetic retinal microvascular complications. Copyright © 2013 John Wiley & Sons, Ltd. 相似文献
64.
Joana Lia Ferreira Maria João Melo Ana Maria Ramos 《Polymer Degradation and Stability》2010,95(4):453-461
The photochemistry of poly(vinyl acetate), PVAc, homopolymer, of PVAc mixtures with selected pigments and fillers, and of accurate historic reproductions based on the colours prepared by Portuguese artist Joaquim Rodrigo and on those supplied by the company A Favrel was studied. The systems, applied as films, were irradiated at λ ≥ 300 nm and the changes followed by size exclusion chromatography, infrared spectroscopy, and colorimetry.PVAc as homopolymer or as an emulsion paint proved to be very stable to light, and after 5000 h of irradiation no gel fraction was observed. ΦR (λirr = 313 nm) for chain scission for PVAc was determined to be 7 × 10−8. This value indicates that the mechanism/s operating when irradiating at λ ≥ 300 nm are different from those previously published with irradiation involving 254 nm. No side-group scission was observed, and main chain scission is the foremost photodegradation mechanism. Also, the metal ions present in the pigments do not affect the photochemical stability of the polymer. 相似文献
65.
Jos Maximiano F. Pinheiro Jr. Paulo H.R. Peixoto Celso P. de Melo 《Chemical physics letters》2008,463(1-3):172-177
We have used ab initio methods to confirm the existence of an inversion in the photoinduced intramolecular electron transfer in large conjugated pyridinium betaines, by examining compounds where an imidazole ring and a pyridinic group are connected by polyenic chains of increasing size. As these intermediary conjugated bridges get longer, an unusual net charge transfer is observed. The conjugated chain becomes a channel for the photoinduced electronic density flow, and the amount of charge at the donor and acceptor groups is reduced, while an inversion in the spatial localization of the frontier orbitals occurs. We discuss the corresponding implications on the nonlinear optical, photochemical and solvatochromic properties of these molecules. 相似文献
66.
In this note, we obtain a lower bound for the number of connected hyperplanes of a 3-connected binary matroid M containing a fixed set A provided M|A is coloopless. 相似文献
67.
68.
Christian J.L. Hermes Robson O. Piucco Jader R. Barbosa Cláudio Melo 《Experimental Thermal and Fluid Science》2009,33(2):371-379
The present study advances a theoretical and experimental investigation of the frost growth and densification on flat surfaces. This study focuses on the most important factors affecting the frost formation process, i.e. the surrounding air temperature, humidity and velocity, and the surface temperature. The processes of frost growth and densification were investigated experimentally in order to provide a physical basis for the development of a theoretical model to predict the variation of the frost layer thickness and mass with time. The mathematical model was based on mass and energy balances within the frost layer, assuming the frost as a porous medium and accounting for the supersaturation of the moist air on the frost surface. The governing equations for mass and heat diffusion were integrated analytically, giving rise to a semi-algebraic formulation which requires numerical integration of only one time dependent ordinary differential equation. When compared with experimental data, the model predictions of the frost thickness as a function of time agreed to within ±10% error bands. The experimentally-validated model was then used to predict the frost layer growth and densification with respect to the operation conditions such as plate surface temperature, air stream temperature, humidity and velocity. 相似文献
69.
G.M.N. Costa T. Dias M. Cardoso Y. Guerrieri F.L.P. Pessoa S.A.B. Vieira de Melo M. Embiruu 《Fluid Phase Equilibria》2008,267(2):140-149
A large number of equations of state and activity coefficient models capable of describing phase equilibria in polymer solutions are available today, but only a few of these models have been applied to different systems. It is therefore useful to investigate the performance of existing thermodynamic models for complex polymer solutions which have not yet been widely studied. The present work studies the application of several activity coefficient models [P.J. Flory, Principles of Polymer Chemistry, Cornell University Press, New York, NY, 1953; T. Oishi, J.M. Prausnitz, Estimation of solvent activities in polymer solutions using a group-contribution method, Ind. Eng. Chem. Process Design Dev. 17 (1978) 333; H.S. Elbro, A. Fredenslund, P. Rasmussen, A new simple equation for the prediction of solvent activities in polymer solutions, Macromolecules 23 (1990) 4707; G.M. Kontogeorgis, A. Fredenslund, D. Tassios, Simple activity coefficient model for the prediction of solvent activities in polymer solutions, Ind. Eng. Chem. Res. 32 (1993) 362; C. Chen, A segment-based local composition model for the Gibbs energy of polymer solutions, Fluid Phase Equilib. 83 (1993) 301; A. Vetere, Rules for predicting vapor–liquid equilibria of amorphous polymer solutions using a modified Flory–Huggins equation, Fluid Phase Equilib. 97 (1994) 43; C. Qian, S.J. Mumby, B.E. Eichinger, Phase diagrams of binary polymer solutions and blends, Macromolecules 24 (1991) 1655; Y.C. Bae, J.J. Shim, D.S. Soane, J.M. Prausnitz, Representation of vapor–liquid and liquid–liquid equilibria for binary systems containing polymers: applicability of an extended Flory–Huggins equation, J. Appl. Polym. Sci. 47 (1993) 1193; G. Bogdanic, J. Vidal, A segmental interaction model for liquid–liquid equilibrium calculations for polymer solutions, Fluid Phase Equilibria 173 (2000) 241] and activity coefficient from equations of state [F. Chen, A. Fredenslund, P. Rasmussen, Group-contribution Flory equation of state for vapor–liquid equilibria en mixtures with polymers, Ind. Eng. Chem. Res. 29 (1990) 875; M.S. High, R.P. Danner, Application of the group contribution lattice—fluids EOS to polymer solutions, AIChE J. 36 (1990) 1625]. The evaluation of these models was carried out both at infinite dilution and at finite concentrations and the results compared to experimental data. Furthermore, liquid–liquid equilibrium predictions for binary polymer solutions using six activity coefficient models are compared in this work. The parameters were estimated for all the models to achieve the best possible representation of the reported experimental equilibrium behavior. 相似文献
70.
Alam Gustavo Trov Silene Alessandra Santos Melo Raquel Fernandes Pupo Nogueira 《Journal of photochemistry and photobiology. A, Chemistry》2008,198(2-3):215-220
Photodegradation of the pharmaceuticals amoxicillin (AMX), bezafibrate (BZF) and paracetamol (PCT) in aqueous solutions via the photo-Fenton process was investigated under black-light and solar irradiation. The influences of iron source, initial H2O2 concentration and matrix (distilled water and sewage treatment plant effluent) on degradation efficiency were discussed in detail. The results showed that (i) the degradation of the drugs was favored in the presence of potassium ferrioxalate (FeOx) in comparison to Fe(NO3)3; (ii) the increase of the H2O2 concentration improved the efficiency of AMX and BZF oxidation; however, the same was not observed for PCT; (iii) the influence of the matrix was observed for the degradation of BZF and PCT; (iv) under solar irradiation, the oxidation of the BZF and PCT is faster than under black-light irradiation. All these pharmaceuticals can be efficiently degraded employing the process evaluated. 相似文献