Towards a Molecular Understanding of Cation-Anion Interactions and Self-aggregation of Adeninate Salts in DMSO by NMR and UV Spectroscopy and Crystallography

Rare anionic forms of nucleic acids play a significant biological role and lead to spontaneous mutations and replication and translational errors. There is a lack of information surrounding the stability and reactivity of these forms. Ion pairs of mono-sodium and -potassium salts of adenine exist in DMSO solution with possible cation coordination sites at the N1, N7 and N9 atoms of the purine ring. At increasing concentrations π-π stacked dimers are the predominant species of aggregates followed by higher order aggregation governed by coordination to metal cations in which the type of counter ion present has a central role in the aggregate formation.     

Prediction of binding poses to FXR using multi-targeted docking combined with molecular dynamics and enhanced sampling

Advanced molecular docking methods often aim at capturing the flexibility of the protein upon binding to the ligand. In this study, we investigate whether instead a simple rigid docking method can be applied, if combined with multiple target structures to model the backbone flexibility and molecular dynamics simulations to model the sidechain and ligand flexibility. The methods are tested for the binding of 35 ligands to FXR as part of the first stage of the Drug Design Data Resource (D3R) Grand Challenge 2 blind challenge. The results show that the multiple-target docking protocol performs surprisingly well, with correct poses found for 21 of the ligands. MD simulations started on the docked structures are remarkably stable, but show almost no tendency of refining the structure closer to the experimentally found binding pose. Reconnaissance metadynamics enhances the exploration of new binding poses, but additional collective variables involving the protein are needed to exploit the full potential of the method.     

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Bis(imino)pyridine iron complexes for aldehyde and ketone hydrosilylation

Bis(imino)pyridine iron dinitrogen and dialkyl complexes are well-defined precatalysts for the chemo- and regioselective reduction of aldehydes and ketones. Efficient carbonyl hydrosilylation is observed at low (0.1-1.0 mol %) catalyst loadings and with 2 equiv of either PhSiH(3) or Ph(2)SiH(2), representing one of the most active iron-catalyzed carbonyl reductions reported to date.     

Defect chemistry of polyfluorenes: identification of the origin of "interface defects" in polyfluorene based light-emitting devices

Deprotonation of hydroxy terminated polyfluorenes results in a greenish emission also providing a rational explanation for so called "interface defects" in polymeric light-emitting devices (PLEDs).     

Platinum species in the pores of NaX, NaY and NaA zeolites studied using EPR, XAS and FTIR spectroscopies

The results of X-band EPR, X-ray absorption and Fourier transform infrared spectroscopy on Pt(NH(3))(4)(2+) exchanged NaX, NaY and NaA zeolites reveal after oxygen calcination at 573 K that diamagnetic Pt(2+) is not the only product. Calcination provides Pt(3+) cations, but depending on the heating rate, the decomposition of amino groups during calcination also produces hydrogen that reduces Pt(3+) to Pt(2+) and Pt(+). NaX (Si/Al = 1.23) has a more negative framework charge than NaY (Si/Al = 2.31), so Pt(3+) can be stabilized only in NaX, whereas lower oxidation states of Pt such as Pt(+) can be stabilized in both, NaX and NaY, and neither of the paramagnetic Pt cations are stabilized in NaUSY (Si/Al = 3). The autoreduction process allows controlling the number of Pt(3+) and Pt(+) in the NaX zeolite by changing the calcination heating rate: a heating rate of 1.25 K min(-1) gives only Pt(+), but 0.5 K min(-1) gives a Pt(3+)/Pt(+) ratio close to 1. The structure of the support is also important for the synthesis of Pt species. While isolated paramagnetic Pt ions were stabilized in faujasite zeolites (NaX and NaY), a paramagnetic Pt dimer was obtained in a Linde type A zeolite (LTA, Si/Al = 1) by applying the same preparation methods. The fraction of paramagnetic Pt species which were characterized by X-band EPR spectroscopy amounts to 2-18% of the total Pt in the zeolites, the remaining Pt must be diamagnetic.     

Preliminary investigation of a medium power argon radiofrequency capacitively coupled plasma as atomization cell in atomic fluorescence spectrometry of cadmium

The single ring electrode radiofrequency capacitively coupled plasma torch (SRTr.f.CCP) operated at 275W, 27.12 MHz and Ar flow rate below 0.7 lmin(-1) was investigated for the first time as atomization cell in atomic fluorescence spectrometry (AFS) using electrodeless discharge lamps (EDL) as primary radiation source and charged coupled devices as detector. The signal to background ratio (SBR) and limit of detection for Cd determination by EDL-SRTr.f.CCP-AFS were compared to those obtained in atomic emission spectrometry using the same plasma torch. The detection limit in fluorescence was 4.3 ngml(-1) Cd compared to 65 ngml(-1) and 40 ngml(-1) reported in r.f.CCP-atomic emission (AES) equipped with single or double ring electrode. The lower detection limit in EDL-SRTr.f.CCP-AFS is due to a much better SBR in fluorescence. The limit of detection was also compared to those in atomic fluorescence with inductively coupled plasma (0.4 ngml(-1)), microwave plasma torch (0.25 ngml(-1)) and air-acetylene flame (8 ngml(-1)). The influence of light-scattering through the plasma and the secondary reflection of the primary radiation on the wall of the quartz tube on the analytical performance are discussed. The non-spectral matrix effects of Ca, Mg and easily ionized elements are much lower in EDL-SRTr.f.CCP-AFS compared to SRTr.f.CCP-AES. The new technique was applied in the determination of Cd in contaminated soils, industrial hazardous waste (0.4-370 mgkg(-1)) and water (113 microgl(-1)) with repeatability of 4-8% and reproducibility in the range of 5-12%, similar to those in ICP-AES. The results were checked by the analysis of a soil and water CRM with a recovery degree of 97+/-9% and 98+/-4%, for a confidence limit of 95%. The present EDL-SRTr.f.CCP-AFS is a promising technique for Cd determination in environmental samples.     

Effect of ionic surfactants on drainage and equilibrium thickness of emulsion films

This paper presents new theoretical and experimental results that quantify the role of surfactant adsorption and the related interfacial tension changes and interfacial forces in the emulsion film drainage and equilibrium. The experimental results were obtained with plane-parallel microscopic films from aqueous sodium dodecyl sulphate solutions formed between two toluene droplets using an improved micro-interferometric technique. The comparison between the theory and the experimental data show that the emulsion film drainage and equilibrium are controlled by the DLVO interfacial forces. The effect of interfacial viscosity and interfacial tension gradient (the Marangoni number) on the film drainage is also significant.