Quantum chemical calculations on thioridazine

Quantum chemical CNDO /2 calculations for the conformational preference of the side chain of thioridazine as a function of angle indicated the crystallographically determined structure gave the lowest energy. There is also a small region of conformational flexibility within the first 90° of rotation of the side chain. This is commensurate with the results which we had obtained previously for our similar calculations for promazine and its Cl and CF₃ derivatives, perazine and its Cl and CF₃ derivatives, and for the hypothetical hitherto unknown N-piperidinopromazine and its Cl and CF₃ derivatives. The conformational profile of thioridazine resembles that of the perazines. The calculated gross atomic populations on the alkyl nitrogen in thioridazine was within the range we had previously found necessary for neuroleptic activity.     

The absorption spectrum of the Ag2 molecule

The high dispersion absorption spectrum of the Ag₂ molecule has been photographed in the ～5300–1500-Å region. Observations include the previously reported A ← X, B ← X, C ← X, D ← X, and E ← X transitions and a new H ← X transition which occurs in the vacuum ultraviolet. Extensive spectral blending precluded detailed rotational analyses, but the band structures are consistent with $\text{ΔΩ}\text{= 0}$ and $\text{ΔΩ}\text{≥1}$ for D-X and C-X, respectively. The H state is perturbed and probably predissociated. The following molecular constants (in cm^?1) were obtained from fitting bandhead data to the usual expressions:

     

183.

PROBING PHOTODYNAMIC DAMAGE IN NUCLEIC ACIDS WITH A DAMAGE-SPECIFIC DNA BINDING PROTEIN: A COMPARISON OF THE B and Z DNA CONFORMATIONS   总被引：3，自引：0，他引：3  

Ross S.  Feldberg Caroline  Brown Josephine A.  Carew Judith L.  Lucas 《Photochemistry and photobiology》1983,37(5):521-524

—We have employed a damage-specific DNA binding protein from human cells as a probe for base damage in polymers irradiated with white light in the presence of methylene blue. Protein-recognizable damage is introduced only into guanine-containing polymers and quenching of damage introduction by H₂O and sodium azide suggest the involvement of a singlet oxygen mechanism. Using poly d(G-m⁵C), we have demonstrated that the left-handed double helical Z conformation is much less susceptible to guanine photooxidation than is the usual B conformation. We speculate that this difference in reactivity may reflect steric hindrance at the purine C-4 position and could provide some insight into the initial steps of the reaction between singlet oxygen and guanine in nucleic acid polymers.     

184.

Carbamoylimidazolium and thiocarbamoylimidazolium salts: novel reagents for the synthesis of ureas, thioureas, carbamates, thiocarbamates and amides     

Justyna A. Grzyb  Chiaki Yoshina-Ishii  R.Stanley Brown 《Tetrahedron》2005,61(30):7153-7175

Carbamoylimidazolium salts act as efficient N,N-disubstituted carbamoylating reagents. These salts are readily prepared by the sequential treatment of secondary amines with N,N′-carbonyldiimidazole (CDI) and iodomethane. The carbamoylimidazolium salts are more efficient carbamoyl transfer reagents than the intermediate carbamoylimidazoles, as a result of the ‘imidazolium’ effect. Kinetic studies on the base promoted hydrolysis of both carbamoylimidazoles and carbamoylimidazolium salts reveal over a hundred-fold rate acceleration. The salts react with amines, thiols, phenols/alcohols, and carboxylic acids in high yields, without the need for subsequent chromatographic purification of the products, producing ureas, thiocarbamates, carbamates, and amides, respectively. Analogous thiocarbamoylimidazolium salts were also synthesized from secondary amines and N,N′-thiocarbonyldiimidazole (TCDI), followed by methylation with iodomethane.     

185.

Location of saddle points and minimum energy paths by a constrained simplex optimization procedure     

Klaus Müller  Leo D. Brown 《Theoretical chemistry accounts》1979,53(1):75-93

Two methods are proposed, one for the location of saddle points and one for the calculation of steepest-descent paths on multidimensional surfaces. Both methods are based on a constrained simplex optimization technique that avoids the evaluation of gradients or second derivative matrices. Three chemical reactions of increasing structural complexity are studied within the PRDDO SCF approximation. Predicted properties of reaction hypersurfaces are in good overall agreement with those determined by gradient minimization and gradient following algorithms in connection with various ab initio SCF methods. Computational efforts required by the new procedures are discussed.     

186.

Regiospecific synthesis of mono- and bicyclic 6-alkoxy-2-pyrones and their use in the preparation of substituted aromatics,anthraquinones, and tetracyclic intermediates for 11-deoxyanthracycline synthesis     

Michael E. Jung  John A. Lowe  Mark A. Lyster  Manabu Node  Rudolf W. Pfluger  Richard W. Brown 《Tetrahedron》1984,40(22):4751-4766

Several mono- and bicyclic 6-methoxy-2-pyrones having substituents at C4 and C5 can be prepared regiospecifically by either of two routes: (1) regiospecific construction of a glutaconic half-ester followed by dehydrative cyclization, and (2)regiospecific Friedel-Crafts acylation of 6-methoxy-2-pyrones at C5. These pyrones undergo clean and regiospecific Diels-Alder cycloadditions with various unsymmetrical dienophiles, e.g., quinones, unsaturated esters, etc, with subsequent loss of carbon dioxide. In this manner several polycyclic aromatic natural products have been prepared such as chrysophanol, helminthosporin, pachybasin, 2-acetylemodin and the purported structure for orientalone. The utility of this approach for the synthesis of the anthracyclines is demonstrated by its use in the preparation of various tetracyclic intermediates for anthracycline synthesis.     

187.

Comparing the dynamical effects of symmetric and antisymmetric stretch excitation of methane in the Cl+CH4 reaction     

Bechtel HA  Camden JP  Brown DJ  Zare RN 《The Journal of chemical physics》2004,120(11):5096-5103

The effects of two nearly isoenergetic C-H stretching motions on the gas-phase reaction of atomic chlorine with methane are examined. First, a 1:4:9 mixture of Cl(2), CH(4), and He is coexpanded into a vacuum chamber. Then, either the antisymmetric stretch (nu(3)=3019 cm(-1)) of CH(4) is prepared by direct infrared absorption or the infrared-inactive symmetric stretch (nu(1)=2917 cm(-1)) of CH(4) is prepared by stimulated Raman pumping. Photolysis of Cl(2) at 355 nm generates fast Cl atoms that initiate the reaction with a collision energy of 1290+/-175 cm(-1) (0.16+/-0.02 eV). Finally, the nascent HCl or CH(3) products are detected state-specifically via resonance enhanced multiphoton ionization and separated by mass in a time-of-flight spectrometer. We find that the rovibrational distributions and state-selected differential cross sections of the HCl and CH(3) products from the two vibrationally excited reactions are nearly indistinguishable. Although Yoon et al. [J. Chem. Phys. 119, 9568 (2003)] report that the reactivities of these two different types of vibrational excitation are quite different, the present results indicate that the reactions of symmetric-stretch excited or antisymmetric-stretch excited methane with atomic chlorine follow closely related product pathways. Approximately 37% of the reaction products are formed in HCl(v=1,J) states with little rotational excitation. At low J states these products are sharply forward scattered, but become almost equally forward and backward scattered at higher J states. The remaining reaction products are formed in HCl(v=0,J) and have more rotational excitation. The HCl(v=0,J) products are predominantly back and side scattered. Measurements of the CH(3) products indicate production of a non-negligible amount of umbrella bend excited methyl radicals primarily in coincidence with the HCl(v=0,J) products. The data are consistent with a model in which the impact parameter governs the scattering dynamics.     

188.

Determination and confirmation of the amnesic shellfish poisoning toxin, domoic acid, in shellfish from Scotland by liquid chromatography and mass spectrometry   总被引：5，自引：0，他引：5  

Hess P  Gallacher S  Bates LA  Brown N  Quilliam MA 《Journal of AOAC International》2001,84(5):1657-1667

During 1998 and early 1999, shellfish samples from sites in Scotland were found to contain the amnesic shellfish poisoning toxin, domoic acid (DA). Two different techniques, liquid chromatography (LC) with UV diode-array detection and LC with mass spectrometric (MS) detection, were used to detect and confirm DA in shellfish extracts. The LC/UV method was validated for routine monitoring by recovery experiments on spiked mussel and scallop tissues with a certified mussel tissue used as reference material. Crude extracts of selected samples as well as extracts cleaned with strong anion exchange (SAX) were analyzed by both LC/UV and LC/MS. Good correlation (linear regression r2 = 0.996, slope = 0.93) between the 2 methods was found for cleaned extracts. Analyses of crude extracts by LC/UV produced false-positive results in 2 crab samples, whereas LC/MS analyses gave accurate results. It was concluded that LC/UV is a valid approach for routine monitoring of DA in shellfish when cleanup is performed with a SAX cartridge to prevent false positives. A variety of shellfish species were surveyed for DA content, including Pecten maximus (king scallops), Chlamys opercularis (queen scallop), Mytilus edulis (blue mussels), Cancer pugaris (crab), and Ensis ensis (razor fish). The highest concentration of DA was 105 microg/g in Pecten maximus.     

189.

Self-aggregation and phase behavior of poly(ethylene oxide)-poly(propylene oxide)-poly(ethylene oxide) block copolymers in aqueous solution   总被引：6，自引：0，他引：6  

M. Almgren  W. Brown  S. Hvidt 《Colloid and polymer science》1995,273(1):2-15

The phase behavior and aggregation properties of block copolymers of poly(ethylene oxide)-poly(propylene oxide)-poly(ethylene oxide) (Pluronics, poloxamers) in aqueous solution have recently attracted much attention. Both experimental and theoretical studies are reviewed, not comprehensively, but with the focus on studies, partly cooperative, partly independent, performed by groups in Uppsala (light scattering and fluorescence), Roskilde (rheology and calorimetry), Risø (SANS), Graz (x-ray and speed of sound), and Lund (theoretical model calculations).The phase behavior of these copolymers is similar in many respects to that of conventional nonionic surfactants, with the appearance of hexagonal, cubic, and lamellar liquid crystalline phases at high concentrations. In the isotropic solution phase the critical concentration for micelle formation is strongly temperature dependent, and at a given concentration the monomer to micelle transition occurs gradually over a broad temperature range, partly due to the broad size polydispersity of both the PO- and EO-blocks. For some Pluronic copolymers a transition from globular to long rod-like micelles occurs above a transition temperature, resulting in a strong and sudden increase of viscosity and viscoelasticity of the solution.Size and aggregation numbers have been determined for the globular micelles in some cases, and also the rod-like micelles have been characterized. NMR and fluorescence measurements have provided further information on the properties of the micellar core and mantle. In combination, results from different measurements on the same Pluronics material indicate that the aggregation number of the micelles increases with the temperature, whereas the hydrodynmic radius varies much less. The PEO-mantle of the micelles seems to contract with increasing temperature. The core appears to contain appreciable amounts of PEO in addition to PPO (and also some water). The segregation between core and mantle is not as distinct as in normal micelles, a conclusion which is in line with the predictions from the model calculations.     

190.

SPECTROSCOPY OF CHLOROPHYLL IN BIOLOGICAL AND SYNTHETIC SYSTEMS*     

Jeanette S.  Brown 《Photochemistry and photobiology》1977,26(3):319-326

Abstract. –This review discusses recent spectroscopic studies aimed at discovering the structure, orientation, and function of chlorophyll in vivo. In plant membranes there appear to be at least two distinct types of chlorophyll a. The greater part, over 99%, is antenna chlorophyll which absorbs and transfers radiant energy to a few specialized chlorophyll molecules in a reaction center where the actual charge separation occurs. A dimer-oligomer model for antenna chlorophyll has been proposed on the basis of comparative studies of the absorption spectra of chlorophyll in various dry solvents and in vivo. Unfortunately a similarity between essentially structureless broad spectra is very weak evidence for their original identity. Also the requirement of an anhydrous environment for most of the chlorophyll in biological material is an unlikely postulate. A cross-linked, linear polymer model of chlorophyll in vivo has also been proposed. Recent Resonance Raman spectroscopic results appear to rule out, in large part, either polymer model and once again suggest that it is the various attachments of chlorophyll to proteins which determine its function as antenna pigment in vivo. Circular dichroism measurements of chlorophyll in various plant materials have also led to the conclusion that antenna chlorophyll has strong interaction with protein. However, some doubt still exists as to the interpretation of these CD results. New studies of fluorescence, polarized fluorescence and Resonance Raman spectroscopy of various plant species corroborate the original proposition, based upon deconvolution of absorption spectra, that antenna chlorophyll occurs in vivo in at least five discrete pools, and that each pool is likely to be located in the same environment in different plants. A new model-systems approach to simulating chlorophyll in vivo has come through the use of lipid bilayers and liposomes. Charge transfer has been observed between chlorophyll in a lipid phase and phycobiliproteins or cytochrome c. The most promising, newly synthesized model for the reaction center, P700, is a covalently bound dimeric derivative of pyrochlorophyllide a. Its properties are similar to P700 in several respects except for reversible photooxidation which has not yet been observed. By detergent treatments chlorophyll-protein complexes having about 20–40 chlorophyll a molecules for every P700 have been isolated from different plants, and their spectroscopic properties are under investigation in several laboratories. The several hypotheses to explain the shape of the oxidized minus reduced absorption difference spectrum of P700 have not yet been reconciled. The nature of the photosystem II reaction center chlorophyll, P680, is also a subject of active investigation. Its absorption difference spectrum appears to have two kinetic components.     

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State	Te	ωc	Xωt
X	0.0	192.0	0.58
B	35 838.6	151.8	0.87
C	37 631.6	171.0	0.84
D	39 014.5	168.2	1.20
E	40 159.9	146.1	1.58
H	58 273.1	165.9	2.46

PROBING PHOTODYNAMIC DAMAGE IN NUCLEIC ACIDS WITH A DAMAGE-SPECIFIC DNA BINDING PROTEIN: A COMPARISON OF THE B and Z DNA CONFORMATIONS

—We have employed a damage-specific DNA binding protein from human cells as a probe for base damage in polymers irradiated with white light in the presence of methylene blue. Protein-recognizable damage is introduced only into guanine-containing polymers and quenching of damage introduction by H₂O and sodium azide suggest the involvement of a singlet oxygen mechanism. Using poly d(G-m⁵C), we have demonstrated that the left-handed double helical Z conformation is much less susceptible to guanine photooxidation than is the usual B conformation. We speculate that this difference in reactivity may reflect steric hindrance at the purine C-4 position and could provide some insight into the initial steps of the reaction between singlet oxygen and guanine in nucleic acid polymers.     

Carbamoylimidazolium and thiocarbamoylimidazolium salts: novel reagents for the synthesis of ureas, thioureas, carbamates, thiocarbamates and amides

Carbamoylimidazolium salts act as efficient N,N-disubstituted carbamoylating reagents. These salts are readily prepared by the sequential treatment of secondary amines with N,N′-carbonyldiimidazole (CDI) and iodomethane. The carbamoylimidazolium salts are more efficient carbamoyl transfer reagents than the intermediate carbamoylimidazoles, as a result of the ‘imidazolium’ effect. Kinetic studies on the base promoted hydrolysis of both carbamoylimidazoles and carbamoylimidazolium salts reveal over a hundred-fold rate acceleration. The salts react with amines, thiols, phenols/alcohols, and carboxylic acids in high yields, without the need for subsequent chromatographic purification of the products, producing ureas, thiocarbamates, carbamates, and amides, respectively. Analogous thiocarbamoylimidazolium salts were also synthesized from secondary amines and N,N′-thiocarbonyldiimidazole (TCDI), followed by methylation with iodomethane.     

Location of saddle points and minimum energy paths by a constrained simplex optimization procedure

Two methods are proposed, one for the location of saddle points and one for the calculation of steepest-descent paths on multidimensional surfaces. Both methods are based on a constrained simplex optimization technique that avoids the evaluation of gradients or second derivative matrices. Three chemical reactions of increasing structural complexity are studied within the PRDDO SCF approximation. Predicted properties of reaction hypersurfaces are in good overall agreement with those determined by gradient minimization and gradient following algorithms in connection with various ab initio SCF methods. Computational efforts required by the new procedures are discussed.     

Regiospecific synthesis of mono- and bicyclic 6-alkoxy-2-pyrones and their use in the preparation of substituted aromatics,anthraquinones, and tetracyclic intermediates for 11-deoxyanthracycline synthesis

Several mono- and bicyclic 6-methoxy-2-pyrones having substituents at C4 and C5 can be prepared regiospecifically by either of two routes: (1) regiospecific construction of a glutaconic half-ester followed by dehydrative cyclization, and (2)regiospecific Friedel-Crafts acylation of 6-methoxy-2-pyrones at C5. These pyrones undergo clean and regiospecific Diels-Alder cycloadditions with various unsymmetrical dienophiles, e.g., quinones, unsaturated esters, etc, with subsequent loss of carbon dioxide. In this manner several polycyclic aromatic natural products have been prepared such as chrysophanol, helminthosporin, pachybasin, 2-acetylemodin and the purported structure for orientalone. The utility of this approach for the synthesis of the anthracyclines is demonstrated by its use in the preparation of various tetracyclic intermediates for anthracycline synthesis.     

Comparing the dynamical effects of symmetric and antisymmetric stretch excitation of methane in the Cl+CH4 reaction

The effects of two nearly isoenergetic C-H stretching motions on the gas-phase reaction of atomic chlorine with methane are examined. First, a 1:4:9 mixture of Cl(2), CH(4), and He is coexpanded into a vacuum chamber. Then, either the antisymmetric stretch (nu(3)=3019 cm(-1)) of CH(4) is prepared by direct infrared absorption or the infrared-inactive symmetric stretch (nu(1)=2917 cm(-1)) of CH(4) is prepared by stimulated Raman pumping. Photolysis of Cl(2) at 355 nm generates fast Cl atoms that initiate the reaction with a collision energy of 1290+/-175 cm(-1) (0.16+/-0.02 eV). Finally, the nascent HCl or CH(3) products are detected state-specifically via resonance enhanced multiphoton ionization and separated by mass in a time-of-flight spectrometer. We find that the rovibrational distributions and state-selected differential cross sections of the HCl and CH(3) products from the two vibrationally excited reactions are nearly indistinguishable. Although Yoon et al. [J. Chem. Phys. 119, 9568 (2003)] report that the reactivities of these two different types of vibrational excitation are quite different, the present results indicate that the reactions of symmetric-stretch excited or antisymmetric-stretch excited methane with atomic chlorine follow closely related product pathways. Approximately 37% of the reaction products are formed in HCl(v=1,J) states with little rotational excitation. At low J states these products are sharply forward scattered, but become almost equally forward and backward scattered at higher J states. The remaining reaction products are formed in HCl(v=0,J) and have more rotational excitation. The HCl(v=0,J) products are predominantly back and side scattered. Measurements of the CH(3) products indicate production of a non-negligible amount of umbrella bend excited methyl radicals primarily in coincidence with the HCl(v=0,J) products. The data are consistent with a model in which the impact parameter governs the scattering dynamics.     

Determination and confirmation of the amnesic shellfish poisoning toxin, domoic acid, in shellfish from Scotland by liquid chromatography and mass spectrometry

During 1998 and early 1999, shellfish samples from sites in Scotland were found to contain the amnesic shellfish poisoning toxin, domoic acid (DA). Two different techniques, liquid chromatography (LC) with UV diode-array detection and LC with mass spectrometric (MS) detection, were used to detect and confirm DA in shellfish extracts. The LC/UV method was validated for routine monitoring by recovery experiments on spiked mussel and scallop tissues with a certified mussel tissue used as reference material. Crude extracts of selected samples as well as extracts cleaned with strong anion exchange (SAX) were analyzed by both LC/UV and LC/MS. Good correlation (linear regression r2 = 0.996, slope = 0.93) between the 2 methods was found for cleaned extracts. Analyses of crude extracts by LC/UV produced false-positive results in 2 crab samples, whereas LC/MS analyses gave accurate results. It was concluded that LC/UV is a valid approach for routine monitoring of DA in shellfish when cleanup is performed with a SAX cartridge to prevent false positives. A variety of shellfish species were surveyed for DA content, including Pecten maximus (king scallops), Chlamys opercularis (queen scallop), Mytilus edulis (blue mussels), Cancer pugaris (crab), and Ensis ensis (razor fish). The highest concentration of DA was 105 microg/g in Pecten maximus.     

Self-aggregation and phase behavior of poly(ethylene oxide)-poly(propylene oxide)-poly(ethylene oxide) block copolymers in aqueous solution

The phase behavior and aggregation properties of block copolymers of poly(ethylene oxide)-poly(propylene oxide)-poly(ethylene oxide) (Pluronics, poloxamers) in aqueous solution have recently attracted much attention. Both experimental and theoretical studies are reviewed, not comprehensively, but with the focus on studies, partly cooperative, partly independent, performed by groups in Uppsala (light scattering and fluorescence), Roskilde (rheology and calorimetry), Risø (SANS), Graz (x-ray and speed of sound), and Lund (theoretical model calculations).The phase behavior of these copolymers is similar in many respects to that of conventional nonionic surfactants, with the appearance of hexagonal, cubic, and lamellar liquid crystalline phases at high concentrations. In the isotropic solution phase the critical concentration for micelle formation is strongly temperature dependent, and at a given concentration the monomer to micelle transition occurs gradually over a broad temperature range, partly due to the broad size polydispersity of both the PO- and EO-blocks. For some Pluronic copolymers a transition from globular to long rod-like micelles occurs above a transition temperature, resulting in a strong and sudden increase of viscosity and viscoelasticity of the solution.Size and aggregation numbers have been determined for the globular micelles in some cases, and also the rod-like micelles have been characterized. NMR and fluorescence measurements have provided further information on the properties of the micellar core and mantle. In combination, results from different measurements on the same Pluronics material indicate that the aggregation number of the micelles increases with the temperature, whereas the hydrodynmic radius varies much less. The PEO-mantle of the micelles seems to contract with increasing temperature. The core appears to contain appreciable amounts of PEO in addition to PPO (and also some water). The segregation between core and mantle is not as distinct as in normal micelles, a conclusion which is in line with the predictions from the model calculations.     

SPECTROSCOPY OF CHLOROPHYLL IN BIOLOGICAL AND SYNTHETIC SYSTEMS*

Abstract. –This review discusses recent spectroscopic studies aimed at discovering the structure, orientation, and function of chlorophyll in vivo. In plant membranes there appear to be at least two distinct types of chlorophyll a. The greater part, over 99%, is antenna chlorophyll which absorbs and transfers radiant energy to a few specialized chlorophyll molecules in a reaction center where the actual charge separation occurs. A dimer-oligomer model for antenna chlorophyll has been proposed on the basis of comparative studies of the absorption spectra of chlorophyll in various dry solvents and in vivo. Unfortunately a similarity between essentially structureless broad spectra is very weak evidence for their original identity. Also the requirement of an anhydrous environment for most of the chlorophyll in biological material is an unlikely postulate. A cross-linked, linear polymer model of chlorophyll in vivo has also been proposed. Recent Resonance Raman spectroscopic results appear to rule out, in large part, either polymer model and once again suggest that it is the various attachments of chlorophyll to proteins which determine its function as antenna pigment in vivo. Circular dichroism measurements of chlorophyll in various plant materials have also led to the conclusion that antenna chlorophyll has strong interaction with protein. However, some doubt still exists as to the interpretation of these CD results. New studies of fluorescence, polarized fluorescence and Resonance Raman spectroscopy of various plant species corroborate the original proposition, based upon deconvolution of absorption spectra, that antenna chlorophyll occurs in vivo in at least five discrete pools, and that each pool is likely to be located in the same environment in different plants. A new model-systems approach to simulating chlorophyll in vivo has come through the use of lipid bilayers and liposomes. Charge transfer has been observed between chlorophyll in a lipid phase and phycobiliproteins or cytochrome c. The most promising, newly synthesized model for the reaction center, P700, is a covalently bound dimeric derivative of pyrochlorophyllide a. Its properties are similar to P700 in several respects except for reversible photooxidation which has not yet been observed. By detergent treatments chlorophyll-protein complexes having about 20–40 chlorophyll a molecules for every P700 have been isolated from different plants, and their spectroscopic properties are under investigation in several laboratories. The several hypotheses to explain the shape of the oxidized minus reduced absorption difference spectrum of P700 have not yet been reconciled. The nature of the photosystem II reaction center chlorophyll, P680, is also a subject of active investigation. Its absorption difference spectrum appears to have two kinetic components.