Supercomputer technologies for structural-kinetic study of mechanisms of enzyme catalysis: A quantum-chemical description of aspartoacylase catalysis

The results of modeling of the complete catalytic cycle of aspartoacylase-catalyzed N-acetylaspartate hydrolysis by the combined quantum mechanics/molecular mechanics method and with the use of umbrella sampling replica-exchange molecular dynamics simulations are reported. It has been shown that the decrease in the high-energy barriers of rate-limiting stages is achieved through the preceding equilibrium stages, such as proton transfer and conformational changes. General features of the catalytic behavior of enzymes have been formulated.     

Application of microemulsions for the extraction of <Emphasis Type="Italic">o</Emphasis>-phthalate esters from soil with subsequent separation of microemulsions,simultaneous preconcentration,and gas chromatographic analysis of target components

The possible application of microemulsions as extractants for the extraction of o-phthalate esters from soils with the subsequent breakdown of microemulsions, simultaneous preconcentration of dialkhylphthalates in the organic phase, and their following gas chromatographic analysis with mass-spectrometric detection is demonstrated. The preconcentration factor was 18. The method is characterized by low detection limits, good selectivity, and reproducibility.     

Direct Analysis of Natural Waters by Electron Spray Ionization and High-Resolution Time-of-Flight Mass Spectrometry Detection. Determination of Pesticides of Various Classes

The possibility of directly determining 36 pesticides (derivatives of urea, triazines, triazoles, imidazoles, carbamates, triazinones, benzamides, and pyridazinones and organophosphorus pesticides) by electrospray ionization with high-resolution quadrupole time-of-flight mass spectrometry in natural waters is demonstrated. A significant matrix effect is observed in the determination of pesticides in natural waters, and the use of the standard addition method is proposed for their determination in test samples, both undiluted and diluted with deionized water. The analytical range of the analytes was 0.5–50 ng/mL. The relative standard deviation of the results does not exceed 10%; the time required for the analysis is 10–15 min.     

Copper(II), nickel(II), and zinc(II) complexes with <Emphasis Type="Italic">o</Emphasis>-tozylaminobenzaldehyde 4,6-dimethylpyrimidyl hydrazone

o-Tosylaminobenzaldehyde dimethylpyrimidyl hydrazone and its copper(II), nickel(II), and zinc(II) complexesare synthesized and studied. According to the X-ray diffraction data, the zinc(II) complex has the structure of a tetragonal pyramid with the N₃O donor ligand environment. According to EPR and magnetochemistry data, the copper(II) complex has a similar structure of the chelate core. In the nickel(II) complex, the solvent molecule completes the coordination core to an octahedron.     

Synthesis,structure, and optical properties of iridium(III) complex with 1-benzyl-2-phenylbenzimidazole and 4,4'-dicarboxy-2,2'-bipyridyne

A new cyclometalated iridium(III) complex [Ir(L)₂(Hdcbpy)] (1) has been synthesized, where L is 1-benzyl-2-phenylbenzimidazole and Hdcbpy is monoprotonated 4,4′-dicarboxy-2,2′-bipyridine. The structure of complex 1 has been determined by X-ray diffraction. The optical properties of complex 1 have been studied, and the quantum yield of luminescence has been measured.     

Simulation of equilibria of formation of mono- and polynuclear heteroligand cobalt(II) and nickel(II) complexonates in aqueous solutions

We report the results of our studies of the protolytic and coordination equilibria of formation of mono- and polynuclear heteroligand complexonates containing cobalt(II) and nickel(II) salts and EDTA, as well as monoamine complexons, such as iminodiacetic acid and hydroxyethyliminodiacetic acid. The experimental data obtained by absorption spectrophotometry were processed using the mathematical models that allowed us to assess the probability of existence of a broad range of complex species in the solution and to select the species sufficient for the experimental data to be reconstituted from them. The compositions of the polynuclear heteroligand cobalt(II) and nickel(II) complexonates were determined. The pH ranges of their existence were found; the equilibrium constants of the reactions and the stability constants of the resulting complexes were calculated. An assumption is made about their structure.     

Study of lithium complexes with benzo-15-crown-5 ether by X-ray diffraction and IR spectroscopy

The complex formation of lithium with benzo-15-crown-5 (B15C5) was investigated. The complexes LiB15C5H₂OX, where X = Cl^? (1), I^? (2), (3), (5), and LiBF₄B15C5 (4) were synthesized and studied by IR spectroscopy. Complexes 1–4 were examined by X-ray diffraction. According to IR spectroscopy data, the crown ether conformation changes upon dissolution. The interaction of the extracted complex with the solvent was identified.     

Hybrid materials based on polymethylsilsesquioxanes containing Fe,Pt, and Fe–Pt metallic nanoparticles

New hybrid materials based on Pt, Fe, and Pt–Fe nanoparticles stabilized in a matrix of polymethylsilsesquioxane nanogel and ultrahigh molecular weight polyethylene (UHMWPE) were prepared. Metal vapor synthesis was used to produce mono- and bimetallic nanoparticles. It was shown that organosilicon nanogel effectively stabilizes Pt nanoparticles with an average size of 0.9 nm. Using the nanogel results in the formation of superparamagnetic Fe particles 3–5 nm in size that consist of ferromagnetic Fe⁰ core and antiferromagnetic shells of Fe oxides. It is established that using an organosilicon matrix in the formation of Pt-Fe/UHMWPE systems helps reduce the average particle size of Fe in the material from 6.5 to 4.5 nm and narrow their particle size distribution. The composition, magnetic and electronic characteristics of the nanocomposites are studied via transmission electron microscopy, X-ray photoelectron spectroscopy, Mössbauer spectroscopy, XANES, and EXAFS.     

Oxidation of white phosphorus by peroxides in water

A mixture of hypophosphorous, phosphorous, and phosphoric acids is formed during the anaerobic oxidation of white phosphorus by peroxides [ROOН; R = Н, 3-ClC₆H₄CO, (СН₃)₃С] in water. The rate of reactions grows considerably upon adding nonpolar organic solvents. The activity series of peroxides and solvents are determined experimentally. NMR spectroscopy shows that the main product of the reaction is phosphorous acid, regardless of the nature of the peroxide and solvent. A radical mechanism of oxidation of white phosphorus by peroxides in water is proposed. It is initiated by the homolysis of peroxide with the formation of НO^? radicals that are responsible for the homolytic opening of phosphoric tetrahedrons. Further oxidation and stages of the hydrolysis of intermediate phosphorus-containing compounds yield products of the reaction.     

Photochemical oxidation of persistent cyanide-related compounds

Russian Journal of Physical Chemistry A - Kinetic regularities of the photolysis of thiocyanate solutions using of mono- and polychromatic UV radiation sources with different spectral ranges are...