Isotope exchange in reactions between D2O and size-selected ionic water clusters containing pyridine, H+ (pyridine)m(H2O)n

Pyridine containing water clusters, H(+)(pyridine)(m)(H(2)O)(n), have been studied both experimentally by a quadrupole time-of-flight mass spectrometer and by quantum chemical calculations. In the experiments, H(+)(pyridine)(m)(H(2)O)(n) with m = 1-4 and n = 0-80 are observed. For the cluster distributions observed, there are no magic numbers, neither in the abundance spectra, nor in the evaporation spectra from size selected clusters. Experiments with size-selected clusters H(+)(pyridine)(m)(H(2)O)(n), with m = 0-3, reacting with D(2)O at a center-of-mass energy of 0.1 eV were also performed. The cross-sections for H/D isotope exchange depend mainly on the number of water molecules in the cluster and not on the number of pyridine molecules. Clusters having only one pyridine molecule undergo D(2)O/H(2)O ligand exchange, while H(+)(pyridine)(m)(H(2)O)(n), with m = 2, 3, exhibit significant H/D scrambling. These results are rationalized by quantum chemical calculations (B3LYP and MP2) for H(+)(pyridine)(1)(H(2)O)(n) and H(+)(pyridine)(2)(H(2)O)(n), with n = 1-6. In clusters containing one pyridine, the water molecules form an interconnected network of hydrogen bonds associated with the pyridinium ion via a single hydrogen bond. For clusters containing two pyridines, the two pyridine molecules are completely separated by the water molecules, with each pyridine being positioned diametrically opposite within the cluster. In agreement with experimental observations, these calculations suggest a "see-saw mechanism" for pendular proton transfer between the two pyridines in H(+)(pyridine)(2)(H(2)O)(n) clusters.     

Decomposition of protonated formic acid: One transition state—Two product channels

The unimolecular chemistry of protonated formic acid, [HCOOH]H(+), has been investigated by analyzing the fragmentation of metastable ions (MI) during flight in a sector mass spectrometer, and by proton transfer to formic acid in a Fourier-transform ion cyclotron resonance (FT-ICR) mass spectrometer. High level ab initio calculations have been used to model the relevant parts of the potential energy surface (PES). In addition, ab initio direct dynamics calculations have been conducted, tracing out 60 different reaction trajectories. The only stable isomer in the mass spectrometric experiments is HC(OH)(2)(+), which is the precursor to both observed ionic products, HCO(+) and H(3)O(+), via the same saddle point of the potential energy surface. The detailed motion of the dissociating molecule during passage of the post-transition state region of the PES therefore determines which product ion is formed. After passing the TS a transient HC(O)OH(2)(+) molecule is first formed. High total energy increases the probability that the nascent water molecule will have sufficient speed to escape the HCO(+) moiety. Otherwise, typically at low energies, the two units recombine, upon which intra-complex proton transfer is very likely. Eventually, this will give the more stable H(3)O(+).     

Cytotoxic trans-oriented platinum complexes only form adducts with single-stranded oligodeoxynucleotides

The reactions of the anticancer complex trans-[PtCl(2)[(E)-HN==C(OMe)Me](2)] (trans-EE) with both single-stranded and double-stranded deoxyribonucleotides have been studied by HPLC and 2D [(1)H,(15)N] HMQC NMR spectroscopy and compared with those of cis-[PtCl(2)(NH(3))(2)] (cis-DDP). Reactions of trans-EE with the single-stranded oligonucleotides d(CCTCGCTCTC) and d(CCTGGTCC) proceed rapidly through solvolysis of the starting substrate and subsequent formation of G-N7/monochloro trans-EE adducts. The rate of reaction is comparable to that of formation of an adduct from trans-EE and the dinuclotide d(ApG). Quite unexpectedly, the double-helical duplexes, d(TATGGTACCATA)(2) and d(TATGGCCATA)(2), with no terminal G residues, are practically inert towards trans-EE, and only minor species (< 5 % as estimated from HPLC traces) appear during 24 h reaction time. However, the duplexes d[(CCTCGCTCTC). (GAGAGCGAGG)] and d(GATAGGCCTATC)(2), which contain both terminal and central G residues, undergo platination only at the terminal, solvent-exposed, G residues, thereby confirming that the interior of the duplex is not accessible to trans-EE due to steric hindrance. In contrast, cis-DDP was found to bind exclusively to the central GG pair in d(GATAGGCCTATC)(2).     

Nucleophilic identity substitution reactions. The reaction between water and protonated alcohols

The potential energy surfaces for the reaction between H2O and the protonated alcohols MeOH2+, EtOH2+, PriOH2+, and Bu(t)OH2+ have been explored by means of high level ab initio theoretical methods. Both nucleophilic substitution (SN2) and elimination (E2) pathways have been investigated. Front side (SNF) and the familiar back side (SNB) Walden inversion attack of the nucleophile have been found to be competing for the H2O Bu(t)OH2+ system. In contradiction with the customary relationship between so-called "steric effects" and barrier heights--more alkyl-substituted SN2 reaction centres have higher SN2 reaction barriers--the SN2 reaction barriers are found to be Et > Me > Pri > Bui. This result is in excellent agreement with available experimental data.     

A combined theoretical and experimental approach to the unimolecular loss of molecular hydrogen from protonated formaldehyde: Determination of the average internal energy of metastable [CH2OH]+ ions

Ab initio quantum chemical calculations (MP2/4–31G**) were performed for the dihydrogen elimination reaction from protonated formaldehyde. The energy difference between reactants and products and the activation energies were found to be in good agreement with the corresponding experimental quantities. Theoretical rate vs. energy curves were computed for a series of isotopic variants of the reaction using the Rice–Ramsperger–Kassel–Marcus (RRKM) method. The vibrational frequencies used in these calculations were taken from the 4–31G** geometry-optimized transition state and reactant structures. Quantum mechanical tunnelling was introduced to explain the existence of metastable CH₂OH ions, and a negative kinetic shift of about 0.1 eV was found. The intramolecular kinetic isotope effect for loss of HH/HD and DH/DD was calculated and compared with the experimental data. The result is consistent with the assumption that the average internal energy of metastable [CH₂OH]⁺ ions is very close to the critical energy for H₂ loss.     

Multidimensional analyses of voicing offsets and onsets in female speakers

This study investigates cross-speaker differences in the factors that predict voicing thresholds during abduction-adduction gestures in six normal women. Measures of baseline airflow, pulse amplitude, subglottal pressure, and fundamental frequency were made at voicing offset and onset during intervocalic /h/, produced in varying vowel environments and at different loudness levels, and subjected to relational analyses to determine which factors were most strongly related to the timing of voicing cessation or initiation. The data indicate that (a) all speakers showed differences between voicing offsets and onsets, but the degree of this effect varied across speakers; (b) loudness and vowel environment have speaker-specific effects on the likelihood of devoicing during /h/; and (c) baseline flow measures significantly predicted times of voicing offset and onset in all participants, but other variables contributing to voice timing differed across speakers. Overall, the results suggest that individual speakers have unique methods of achieving phonatory goals during running speech. These data contribute to the literature on individual differences in laryngeal function, and serve as a means of evaluating how well laryngeal models can reproduce the range of voicing behavior used by speakers during running speech tasks.     

A New Tool for Eliminating Indoor Air Quality Complaints

Poor indoor air quality (IAQ) can cause a variety of health problems for building occupants including headaches, respiratory problems, eye irritation and fatigue. Traditional IAQ measurements often fail to identify the root cause of the problems and solutions remain elusive. A new IAQ metric, ultrafine particles, is shown to have a high correlation with complaint areas. Researchers are studying the toxicology of these tiny pollutants on animals and humans. Ultrafine particles are defined as particles smaller than 100nm diameter; nanoparticles, those smaller than 50nm diameter, are a subset of ultrafine particles. A battery-powered, portable condensation particle counter (CPC) can be used to quickly identify the source and transport pathways of ultrafine particle contaminants so they can be eliminated or controlled. The CPC condenses isopropyl alcohol on the particles to grow them to an optically detectable size. The hand-held instrument is fast responding, has a wide concentration range, and can log data to detect trends and short-term excursions. Adding the metric of ultrafine particles may become very important to IAQ investigations in the future.