Chemical screens against a reconstituted multiprotein complex: myricetin blocks DnaJ regulation of DnaK through an allosteric mechanism

DnaK is a molecular chaperone responsible for multiple aspects of bacterial proteostasis. The intrinsically slow ATPase activity of DnaK is stimulated by its co-chaperone, DnaJ, and these proteins often work in concert. To identify inhibitors we screened plant-derived extracts against a reconstituted mixture of DnaK and DnaJ. This approach resulted in the identification of flavonoids, including myricetin, which inhibited activity by up to 75%. Interestingly, myricetin prevented DnaJ-mediated stimulation of ATPase activity, with minimal impact on either DnaK's intrinsic turnover rate or its stimulation by another co-chaperone, GrpE. Using NMR, we found that myricetin binds DnaK at an unanticipated site between the IB and IIB subdomains and that it allosterically blocked binding of DnaK to DnaJ. Together, these results highlight a "gray box" screening approach, which might facilitate the identification of inhibitors of other protein-protein interactions.     

Sequential mechanism of assembly of multidrug efflux pump AcrAB-TolC

Multidrug efflux pumps adversely affect both the clinical effectiveness of existing antibiotics and the discovery process to find new ones. In this study, we reconstituted and characterized by surface plasmon resonance the assembly of AcrAB-TolC, the archetypal multidrug efflux pump from Escherichia coli. We report that the periplasmic AcrA and the outer membrane channel TolC assemble high-affinity complexes with AcrB transporter independently from each other. Antibiotic novobiocin and MC-207,110 inhibitor bind to the immobilized AcrB but do not affect interactions between components of the complex. In contrast, DARPin inhibits interactions between AcrA and AcrB. Mutational opening of TolC channel decreases stability of interactions and promotes disassembly of the complex. The conformation of the membrane proximal domain of AcrA is critical for the formation of AcrAB-TolC and could be targeted for the development of new inhibitors.     

Hemoglobin binding from human blood hemolysate with poly(glycidyl methacrylate) beads

Metal-chelating affinity beads have attracted increasing interest in recent years for protein purification. In this study, iminodiacetic acid (IDA) was covalently attached to the poly(glycidyl methacrylate) [PGMA] beads (1.6 μm in diameter). Cu(2+) ions were chelated via IDA groups on PGMA beads for affinity binding of hemoglobin (Hb) from human blood hemolysate. The PGMA beads were characterized by scanning electron microscopy (SEM). The PGMA-Cu(2+) beads (628 μmol/g) were used in the Hb binding-elution studies. The effects of Hb concentration, pH and temperature on the binding efficiency of PGMA-Cu(2+) beads were performed in a batch system. Non-specific binding of Hb to PGMA beads in the absence of Cu(2+) ions was very low (0.39 mg/g). The maximum Hb binding was 130.3 mg/g. The equilibrium Hb binding increased with increasing temperature. The negative change in Gibbs free energy (ΔG°<0) indicated that the binding of Hb on the PGMA-Cu(2+) beads was a thermodynamically favorable process. The ΔS and ΔH values were 102.2 J/mol K and -2.02 kJ/mol, respectively. Significant amount of the bound Hb (up to 95.8%) was eluted in the elution medium containing 1.0 M NaCl in 1 h. The binding followed Langmuir isotherm model with monolayer binding capacity of 80.3-135.7 mg/g. Consecutive binding-elution experiments showed that the PGMA-Cu(2+) beads can be reused almost without any loss in the Hb binding capacity. To test the efficiency of Hb depletion from blood hemolysate, eluted portion was analyzed by fast protein liquid chromatography. The depletion efficiency for Hb was above 97.5%. This study determined that the PGMA-Cu(2+) beads had a superior binding capacity for Hb compared to the other carriers within this study.     

Carbon nanotube-chitosan modified disposable pencil graphite electrode for vitamin B12 analysis

A single walled carbon nanotube-chitosan (SWCNT-chitosan) modified disposable pencil graphite electrode (PGE) was used in this study for the electrochemical detection of Vitamin B(12). Electrochemical behaviors of SWCNT-chitosan PGE and chitosan modified PGE were compared by using cyclic voltammetry (CV), square-wave voltammetry (SWV) and electrochemical impedance spectroscopy (EIS) techniques. SWCNT-chitosan modified electrode was also used for the quantification of Vitamin B(12) in pharmaceutical products. The results show that this electrode system is suitable for sensitive Vitamin B(12) analysis giving good recovery results. The surface morphologies of the SWCNT-chitosan PGE, chitosan modified PGE and unmodified PGE were characterized by using scanning electron microscopy (SEM).     

Synthesis of a new fluorescent small molecule probe and its use for in vivo lipid imaging

A new small molecule probe for in vivo lipid imaging, LipidGreen (compound 5), was developed. LipidGreen stained lipid droplets in 3T3L1 cell lines and fat deposits in zebrafish without apparent toxicity up to 100 μM. The utility of LipidGreen as a drug screening platform for fat regulation was also demonstrated in live zebrafish.     

Coalescence of single photons emitted by disparate single-photon sources: the example of InAs quantum dots and parametric down-conversion sources

Single photons produced by fundamentally dissimilar physical processes will in general not be indistinguishable. We show how photons produced from a quantum dot and by parametric down-conversion in a nonlinear crystal can be manipulated to be indistinguishable. The measured two-photon coalescence probability is 16%, and is limited by quantum-dot decoherence. Temporal filtering to the quantum-dot coherence time and accounting for detector time response increases this to 61% while retaining 25% of the events. This technique can connect different elements in a scalable quantum network.     

Organic n-channel transistors based on core-cyanated perylene carboxylic diimide derivatives

Five core-cyanated perylene carboxylic diimides end-functionalized with fluorine-containing linear and cyclic substituents have been synthesized and employed in the fabrication of air-stable n-channel organic thin-film field-effect transistors with carrier mobilities up to 0.1 cm2/Vs. The relationships between molecular structure, thin-film morphology, substrate temperature during vacuum deposition, transistor performance, and air stability have been investigated. Our experiments led us to conclude that the role of the fluorine functionalization in the air-stable n-channel operation of the transistors is different than previously thought.     

Four-coordinate Mo(II) as (silox)2Mo(PMe3)2 and its W(IV) congener (silox)2HW(eta2-CH2PMe2)(PMe3) (silox = tBu3SiO)

The reduction of [( (t) Bu 3SiO) 2MoCl] 2 ( 2 2) provided the cyclometalated derivative, (silox) 2HMoMo(kappa-O,C-OSi (t) Bu 2CMe 2CH 2)(silox) ( 3), and alkylation of 2 2 with MeMgBr afforded [( (t) Bu 3SiO) 2MoCH 3] 2 ( 4 2). The hydrogenation of 4 2 was ineffective, but the reduction of 2 2 under H 2 generated [( (t) Bu 3SiO) 2MoH] 2 ( 5 2), and the addition of 2-butyne to 3 gave [(silox) 2Mo] 2(mu:eta (2)eta (2)-C 2Me 2) ( 6), thereby implicating the existence of [(silox) 2Mo] 2 ( 1 2). The addition of (silox)H to Mo(NMe 2) 4 led to (silox) 2Mo(NMe 2) 2 ( 7), but further elaboration of the core proved ineffective. The silanolysis of MoCl 5 afforded (silox) 2MoCl 4 ( 8) and (silox) 3MoCl 3 ( 9) as a mixture from which pure 8 could be isolated, and the addition of THF or PMe 3 resulted in derivatives of 9 as (silox) 2Cl 3MoL (L = THF, 10; PMe 3, 11). Reductions of 11 and (silox) 2WCl 4 ( 15) in the presence of excess PMe 3 provided (silox) 2Cl 2MPMe 3 (M = Mo, 12; W, 16) or (silox) 2HW(eta (2)-CH 2PMe 2)PMe 3 ( 14). While "(silox) 2W(PMe 3) 2" was unstable with respect to W(IV) as 14, a reduction of 12 led to the stable Mo(II) diphosphine, (silox) 2Mo(PMe 3) 2 ( 17). X-ray crystal structures of 10 (pseudo- O h ), 12 (square pyramidal), and 14 and 17 (distorted T d ) are reported. Calculations address the diamagnetism of 12 and 16, and the distortion of 17 and its stability to cyclometalation in contrast to 14.     

Studies of the carbon dioxide and epoxide coupling reaction in the presence of fluorinated manganese(III) acacen complexes: kinetics of epoxide ring-opening

Five-coordinate manganese(III) complexes of N, N'-bis(trifluoroacetylacetone)-1,2-ethylenediimine (tfacacen) have been synthesized and structurally characterized by X-ray crystallography. The presence of the electron-withdrawing -CF3 substituents enhances the electrophilicity of the metal center in these (tfacacen)MnX (X=Cl, N3, NCO, NCS) derivatives when compared with their (acacen)MnX (acacen=N, N'-bis(acetylacetone)-1,2-ethylenediimine) analogs. This is demonstrated by the increased propensity of the Mn(III) center in the tfacacen complexes to bind a sixth ligand. Binding studies were performed utilizing the upsilonN3 stretching frequency in (tfacacen)MnN3, which is sensitive to the coordination of a ligand at the vacant axial site. Of importance, cyclohexene oxide was shown to readily bind to (tfacacen)MnN3, thereby providing an opportunity for directly monitoring the dependence of the epoxide ring-opening process on the metal complex concentration. In this instance, as has been amply demonstrated in the (salen)CrX case, the ring opening of cyclohexene oxide was found to be second-order in [(tfacacen)MnN3], with an activation energy of 71.0+/-6.0 kJ/mol. In the presence of strongly coordinating anions or amine bases, the rate of epoxide ring opening by (tfacacen)MnN3 was greatly retarded. The manganese cyanate and thiocyanate complexes were examined in an effort to develop other initiators for epoxide ring opening which provide readily accessible infrared spectroscopic probes. Indeed, the thiocyanate ligand was found to be well-suited for monitoring the epoxide ring-opening reaction by infrared spectroscopy.     

Pressurized liquid extraction of vitamin E from Brazilian grape seed oil

The goal of this paper is to optimize the pressurized liquid extraction (PLE) of vitamin E from grape seed oil from residues of the wine industry. For this purpose an experimental planning to optimize the extraction of Brazilian grape seed oil by means of PLE with hexane as solvent was applied and the results are compared with conventional methods (Soxhlet and mechanical press extraction). Vitamin E was separated and analyzed using HPLC with UV detection. This study demonstrates the ability of the PLE in extracting grape seed oil rich in vitamin E.