Cleaning of Porous Aluminium Titanate by Oxygen Plasma

The removal of organic contaminants from porous Al₂TiO₅ during treatment in oxygen plasma was studied by optical emission spectroscopy (OES). The samples of Al₂TiO₅ were immersed into water emulsion of mineral oil for 3 h to get soaked. Then, they were thoroughly cleaned in ultrasound to remove oil from the surface. Samples were later exposed to RF oxygen plasma at the pressure of 75 Pa. The plasma density was about 2 × 10¹⁶ m⁻³, the electron temperature was about 6 eV and the density of neutral oxygen atoms was about 2 × 10²¹ m⁻³. Optical emission spectra between 200 and 1,000 nm were measured continuously during plasma treatment. The CO peak resulting from oil oxidation reached a well-pronounced maximum between 100 and 150 s of plasma treatment. The maximum in CO corresponded well with a minimum in O peaks. Concentration of oil in the samples was estimated by energy dispersion X-ray analysis. Initially the samples showed high concentration of carbon (about 38 at.%), while after plasma treatment the carbon concentration decreased below the detection limit. The cleaning efficiency was explained by diffusion of oil towards the surface where it was removed by oxidation with oxygen radicals.     

A simple and efficient chemoselective method for the catalytic deprotection of acetals and ketals using bismuth triflate

Bismuth triflate is a highly efficient catalyst (0.1-1 mol %) for the deprotection of acetals and ketals. The procedure is very facile and selective for acetals derived from ketones and conjugated aldehydes. tert-Butyldimethylsilyl ethers are stable to the reaction conditions. The highly catalytic nature of bismuth triflate and the use of a relatively nontoxic solvent system (THF/H(2)O) make this procedure particularly attractive for large-scale synthesis.     

Synthetic peptidoglycan substrates for penicillin-binding protein 5 of Gram-negative bacteria

The major constituent of the bacterial cell wall, peptidoglycan, is comprised of repeating units of N-acetylglucosamine (NAG) and N-acetylmuramic acid (NAM) with an appended peptide. Penicillin-binding proteins (PBPs) are involved in the final stages of bacterial cell wall assembly. Two activities for PBPs are the cross-linking of the cell wall, carried out by dd-transpeptidases, and the dd-peptidase activity, that removes the terminal d-Ala residue from peptidoglycan. The dd-peptidase activity moderates the extent of the cell wall cross-linking. There exists a balance between the two activities that is critical for the well-being of bacterial cells. We have cloned and purified PBP5 of Escherichia coli. The membrane anchor of this protein was removed, and the enzyme was obtained as a soluble protein. Two fragments of the polymeric cell wall of Gram-negative bacteria (compounds 5 and 6) were synthesized. These molecules served as substrates for PBP5. The products of the reactions of PBP5 and compounds 5 and 6 were isolated and were shown to be d-Ala and the fragments of the substrates minus the terminal d-Ala. The kinetic parameters for these enzymic reactions were evaluated. PBP5 would appear to have the potential for turnover of as many as 1.4 million peptidoglycan strands within a single doubling time (i.e., generation) of E. coli.     

A practical synthesis of nitrocefin

Nitrocefin is a key reagent for high and low throughput assays of the activities of penicillin-binding proteins (PBPs) and beta-lactamases, the former used for discovery of antibiotics and the latter for inhibitors of resistance determinants for beta-lactam antibiotics. This compound is commercially available but is prohibitively expensive because of the circuitous routes to its synthesis. We describe herein a three-step synthesis of nitrocefin that gives an overall yield of 44%. This is a practical route to the synthesis of this key reagent for drug discovery.     

Stereoselective reduction of new fused azoninones with a bridgehead nitrogen

The synthesis of methanothienoazoninones 5a,b is described starting from 2(3)-halogenomethylthio-phenes. Their reduction with sodium borohydride led to the corresponding aminoalcohols 6a,b with a complete stereoselectivity.     

Studies on high-performance size-exclusion chromatography of synthetic polymers. I. Volume of silica gel column packing pores reduced by retained macromolecules

Macromolecules, which stay adsorbed within the active size-exclusion chromatography (SEC) column packings may strongly reduce effective volume of the separation pores. This brings about a decrease of retention volumes of the non-retained polymer samples and results in the increased apparent molar mass values. The phenomenon has been demonstrated with a series of poly(methyl methacrylate)s (PMMA) and a polyethylenoxide (PEO) fully retained by adsorption within macroporous silica gel SEC column from toluene or tetrahydrofuran, respectively. The non-retained probes were polystyrenes (PS) in toluene and both PS and PMMA in THF eluents. The errors in the peak molar mass values determined for the non-retained polymer species using a column saturated with adsorbed macromolecules and considering calibration curves monitored for the original "bare" column packing assumed up to several hundreds of percent. Errors may appear also in the weight and number averages of molar masses calculated from calibration dependences obtained with columns saturated with adsorbed macromolecules. Moreover, the SEC peaks of species eluted from the polymer saturated columns were broadened and in some cases even split. These results demonstrate a necessity not only to periodically re-calibrate the SEC columns but also to remove macromolecules adsorbed within packing in the course of analyses.     

Effect of bacteria growth temperature on the distribution of supercoiled DNA and its thermal stability

Changes in DNA supercoiling might be essential to generate the response of cellular machinery to temperature stress. The heat-induced structural transition for a topoisomer depends on the value of its specific linking difference. We detect only less negatively supercoiled DNA and an abundance of alternative irregular DNA forms at culture temperatures close to the growth limit of Escherichia coli. We show that the irregular forms are derived from regular plasmid DNAs and their population in the cells is temperature-dependent. Here, we show that it is possible to isolate and characterize individual DNA topoisomers directly from cells without a topoisomerase treatment. Temperature gradient gel electrophoresis (TGGE) and atomic force microscopy (AFM) were used to study the effect of bacteria growth temperature on the distribution of supercoiled DNA and its thermal stability.     

The role of an interface in stabilizing reaction intermediates for hydrogen evolution in aprotic electrolytes

By combining idealized experiments with realistic quantum mechanical simulations of an interface, we investigate electro-reduction reactions of HF, water and methanesulfonic acid (MSA) on the single crystal (111) facets of Au, Pt, Ir and Cu in organic aprotic electrolytes, 1 M LiPF₆ in EC/EMC 3:7W (LP57), the aprotic electrolyte commonly used in Li-ion batteries, 1 M LiClO₄ in EC/EMC 3:7W and 0.2 M TBAPF₆ in 3 : 7 EC/EMC. In our previous work, we have established that LiF formation, accompanied by H₂ evolution, is caused by a reduction of HF impurities and requires the presence of Li at the interface, which catalyzes the HF dissociation. In the present paper, we find that the measured potential of the electrochemical response for these reduction reactions correlates with the work function of the electrode surfaces and that the work function determines the potential for Li⁺ adsorption. The reaction path is investigated further by electrochemical simulations suggesting that the overpotential of the reaction is related to stabilizing the active structure of the interface having adsorbed Li⁺. Li⁺ is needed to facilitate the dissociation of HF which is the source of protons. Further experiments on other proton sources, water and methanesulfonic acid, show that if the hydrogen evolution involves negatively charged intermediates, F⁻ or HO⁻, a cation at the interface can stabilize them and facilitate the reaction kinetics. When the proton source is already significantly dissociated (in the case of a strong acid), there is no negatively charged intermediate and thus the hydrogen evolution can proceed at much lower overpotentials. This reveals a situation where the overpotential for electrocatalysis is related to stabilizing the active structure of the interface, facilitating the reaction rather than providing the reaction energy.

By combining idealized experiments with realistic quantum mechanical simulations of an interface, we investigate electroreduction reactions of HF, water and methanesulfonic acid on the single crystal (111) facets of Au, Pt, Ir and Cu in a variety of aprotic electrolytes.     

Mapping of defects in self-assembled monolayers by polymer decoration

A new method mapping the defects in self-assembled monolayers (SAMs) is described. The method is based on electrochemical polymerisation of nonconductive tyramine in defect sites of a monolayer and subsequent visualisation of the polymer structures by atomic force microscopy (AFM). SAMs of hexadecanthiol (HDT) on gold prepared by deposition from solution and microcontact printing were used as a model for this study. The method allows easy mapping of defects on monolayers and provides information about their shape, size, size distribution, defect density and spatial distribution. Comparative electrochemical characterisation of defects in SAMs before and after polymerisation shows that polymer growth occurs on the sites of uncovered gold. The approach should be applicable for the characterisation of defects in other types of ultra-thin organic films on conducting surfaces.     

Muropeptides in Pseudomonas aeruginosa and their Role as Elicitors of β‐Lactam‐Antibiotic Resistance

Muropeptides are a group of bacterial natural products generated from the cell wall in the course of its turnover. These compounds are cell‐wall recycling intermediates and are also involved in signaling within the bacterium. However, the identity of these signaling molecules remains elusive. The identification and characterization of 20 muropeptides from Pseudomonas aeruginosa is described. The least abundant of these metabolites is present at 100 and the most abundant at 55,000 molecules per bacterium. Analysis of these muropeptides under conditions of induction of resistance to a β‐lactam antibiotic identified two signaling muropeptides (N‐acetylglucosamine‐1,6‐anhydro‐N‐acetylmuramyl pentapeptide and 1,6‐anhydro‐N‐acetylmuramyl pentapeptide). Authentic synthetic samples of these metabolites were shown to activate expression of β‐lactamase in the absence of any β‐lactam antibiotic, thus indicating that they serve as chemical signals in this complex biochemical pathway.