The first structurally characterized nitrosyl heme thiolate model complex

The NO ligand in the formally {FeNO}6 compound [Fe(oep)(NO)(thiolate)] is bent, and does not impart a significant structural trans effect to the Fe-S bond.     

Use of short monolithic columns for isolation of low abundance membrane proteins

Convective interaction media (CIM) monoliths provide a stationary phase with a high binding capacity for large molecules and are capable of high flow rates at a very low pressure drop. Used as anion- and cation-exchangers or with affinity ligands such as antibodies, these columns have the potential for processing large volumes of complex biological mixtures within a short time. In the present report, monoclonal antibodies against several rat liver plasma membrane proteins were bound and cross-linked to protein A or protein G CIM affinity columns with a bed volume of only 60 microL. Antigens recognized by bound antibodies and co-eluting (interacting) proteins were rapidly isolated in a single step from either total plasma membrane extracts or subfractions isolated using anion-exchange CIM disk-shaped columns. The isolated antigens and co-eluting proteins were subsequently identified by immunoblot or by LC-MS/MS.     

Broadband dielectric response of the ionic liquid N-methyl-N-ethylpyrrolidinium dicyanamide

Dielectric relaxation measurements as a function of temperature, and of concentration in a non-coordinating solvent, the first reported for an ionic liquid, indicate a crossover in the relaxation mechanism due to varying levels of ion aggregation and the interplay of formation kinetics and relaxation dynamics of associates.     

Quantitative analysis of microstructures by secondary ion mass spectrometry.

The focus of this review is on trace-element quantitation of microstructures in solids. This review is aimed at the nonspecialist who wants to know how secondary ion mass spectrometry (SIMS) quantitation is achieved. Despite 35 years of SIMS research and applications, SIMS quantitation remains a fundamentally empirical enterprise and is based on standards. The most used standards are "bulk standards"-solids with a homogeneous distribution of a trace element-and ion-implanted solids. The SIMS systematics of bulk standards and ion-implanted solids are reviewed.     

P-derived organic cations as structure-directing agents: synthesis of a high-silica zeolite (ITQ-27) with a two-dimensional 12-ring channel system

Recently, efforts have been made to synthesize large-pore, multidimensional zeolite frameworks as a basis for new catalysts to improve various hydrocarbon conversions. A new aluminosilicate zeolite, ITQ-27, has been prepared using the phosphorus-containing structure-directing agent, dimethyldiphenylphosphonium. Its crystal structure was determined in its calcined form by direct methods (FOCUS) on synchrotron powder diffraction data (lambda = 0.8702 A) after the unit cell and space group were determined from tilt electron diffraction experiments on individual microcrystals. The material crystallizes in space group Fmmm, where a = 27.7508(5) A, b = 25.2969(7) A, and c = 13.7923(4) A. The final model, refined by Rietveld methods, comprises seven unique T-sites forming a framework with straight 12-MR channels that are connected by 14-MR openings between them. (Corresponding 12-ring pore dimension is 6.94 A x 6.20 A.) Since access from one 14-MR opening to the next is through the 12-MR channel, the structure is best described as a two-dimensional, 12-MR framework.     

Photochemical isomerization of N-heterocyclic carbene ruthenium hydride complexes: in situ photolysis, parahydrogen, and computational studies

Low-temperature UV irradiation of the N-heterocyclic carbene complex Ru(IEt2Me2)(PPh3)2(CO)H2 (IEt2Me2 = 1,3-bis(ethyl)-4,5-dimethylimidazol-2-ylidene) leads to a remarkable photoisomerization reaction. By combining in situ photolysis and parahydrogen experiments to characterize the ultimate photoproducts and DFT calculations to interrogate the structures of the key 16-electron intermediates, the importance of both PPh3 and H2 loss pathways has been established.     

Assembly of three-dimensional polymeric constructs containing cells/biomolecules using carbon dioxide

Using low-pressure carbon dioxide (CO2), we demonstrated a novel and versatile approach to assembling polymeric constructs in the presence of cells and/or biomolecules in an aqueous environment. By regulating the CO2 pressure, the assembly was completed at biologically permissive temperatures with excellent preservation of the original structures. We further demonstrated that mammalian cells can survive the CO2-assisted bioassembly process (37 degrees C, 1.38 MPa, approximately 1 h). Human mesenchymal stem cells from bone marrow (hMSCs) exhibited the same cell morphology and proliferation potential as the untreated control. Mouse embryonic stem cells (mESCs) maintained ES-specific Oct-4 gene expression and differentiation potential after CO2 treatment as well. This method highlights the ability to construct multiple biodegradable polymeric scaffolds with well-defined architecture, on which various types of cells were grown, into a predesigned three-dimensional complex. In addition, protein and DNA bioactivity can be preserved in the context of a CO2-assisted assembly. This CO2-assisted bioassembly method provides for a manufacturing platform that, thus far, has been lacking in the fields of tissue engineering, cell-based biochips, cell therapy, and drug delivery.     

A modular approach toward regulating the secondary coordination sphere of metal ions: differential dioxygen activation assisted by intramolecular hydrogen bonds

Metal ion function depends on the regulation of properties within the primary and second coordination spheres. An approach toward studying the structure-function relationships within the secondary coordination sphere is to construct a series of synthetic complexes having constant primary spheres but structurally tunable secondary spheres. This was accomplished through the development of hybrid urea-carboxamide ligands that provide varying intramolecular hydrogen bond (H-bond) networks proximal to a metal center. Convergent syntheses prepared ligands [(N'-tert-butylureayl)-N-ethyl]-bis(N' '-R-carbamoylmethyl)amine (H(4)1R) and bis[(N'-tert-butylureayl)-N-ethyl]-(N' '-R-carbamoylmethyl)amine (H(5)2R), where R=isopropyl, cyclopentyl, and (S)-(-)-alpha-methylbenzyl. The ligands with isopropyl groups H(4)1iPr and H(5)2iPr were combined with tris[(N'-tert-butylureayl)-N-ethyl]amine (H6buea) and bis(N-isopropylcarbamoylmethyl)amine (H(3)0iPr) to prepare a series of Co(II) complexes with varying H-bond donors. [CoIIH(2)2iPr]- (two H-bond donors), [CoIIH1iPr]- (one H-bond donor), and [CoII0iPr]- (no H-bond donors) have trigonal monopyramidal primary coordination spheres as determined by X-ray diffraction methods. In addition, these complexes have nearly identical optical and EPR properties that are consistent with S=3/2 ground states. Electrochemical studies show a linear spread of 0.23 V in anodic potentials (Epa) with [CoIIH(2)2iPr]- being the most negative at -0.385 V vs [Cp2Fe]+/[Cp2Fe]. The properties of [CoIIH3buea]- (H3buea, tris[(N'-tert-butylureaylato)-N-ethyl]aminato that has three H-bond donors) appears to be similar to that of the other complexes based on spectroscopic data. [CoIIH3buea]- and [CoIIH(2)2iPr]- react with 0.5 equiv of dioxygen to afford [CoIIIH3buea(OH)]- and [CoIIIH(2)2iPr(OH)]-. Isotopic labeling studies confirm that dioxygen is the source of the oxygen atom in the hydroxo ligands: [CoIIIH3buea(16OH)]- has a -(O-H) band at 3589 cm-1 that shifts to 3579 cm-1 in [CoIIIH3buea(18OH)]-; [CoIIIH(2)2iPr(OH)]- has -(16O-H)=3661 and -(18O-H)=3650 cm-1. [CoIIH1iPr]- does not react with 0.5 equiv of O2; however, treating [CoIIH1iPr]- with excess dioxygen initially produces a species with an X-band EPR signal at g=2.0 that is assigned to a Co-O2 adduct, which is not stable and converts to a species having properties similar to those of the CoIII-OH complexes. Isolation of this hydroxo complex in pure form was complicated by its instability in solution (kint=2.5x10-7 M min-1). Moreover, the stability of the CoIII-OH complexes is correlated with the number of H-bond donors within the secondary coordination sphere; [CoIIIH3buea(OH)]- is stable in solution for days, whereas [CoIIIH(2)2iPr(OH)]- decays with a kint=5.9x10-8 M min-1. The system without any intramolecular H-bond donors [CoII0iPr]- does not react with dioxygen, even when O2 is in excess. These findings indicate a correlation between dioxygen binding/activation and the number of H-bond donors within the secondary coordination sphere of the cobalt complexes. Moreover, the properties of the secondary coordination sphere affect the stability of the CoIII-OH complexes with [CoIIIH3buea(OH)]- being the most stable. We suggest that the greater number of intramolecular H-bonds involving the hydroxo ligand reduces the nucleophilicity of the CoIII-OH unit and reinforces the cavity structure, producing a more constrained microenvironment around the cobalt ion.     

A total synthesis of xestodecalactone a and proof of its absolute stereochemistry: interesting observations on dienophilic control with 1,3-disubstituted nonequivalent allenes

A concise total synthesis of xestodecalactone A, utilizing a Diels-Alder strategy is described. The focal Diels-Alder reaction relied on an "ynoate" dienophile to rapidly assemble the required resorcylinic acid scaffold. During this study, Diels-Alder cycloaddition reactions involving 1,3-disubstituted nonequivalent allene dienophiles were studied, and some surprising results were encountered.     

Tandem mass spectrometry of intact GroEL-substrate complexes reveals substrate-specific conformational changes in the trans ring

It has been suggested that the bacterial GroEL chaperonin accommodates only one substrate at any given time, due to conformational changes to both the cis and trans ring that are induced upon substrate binding. Using electrospray ionization mass spectrometry, we show that indeed GroEL binds only one molecule of the model substrate Rubisco. In contrast, the capsid protein of bacteriophage T4, a natural GroEL substrate, can occupy both rings simultaneously. As these substrates are of similar size, the data indicate that each substrate induces distinct conformational changes in the GroEL chaperonin. The distinctive binding behavior of Rubisco and the capsid protein was further investigated using tandem mass spectrometry on the intact 800-914 kDa GroEL-substrate complexes. Our data suggest that even in the gas phase the substrates remain bound inside the GroEL cavity. The analysis revealed further that binding of Rubisco to the GroEL oligomer stabilizes the chaperonin complex significantly, whereas binding of one capsid protein did not have the same effect. However, addition of a second capsid protein molecule to GroEL resulted in a similar stabilizing effect to that obtained after the binding of a single Rubisco. On the basis of the stoichiometry of the GroEL chaperonin-substrate complex and the dissociation behavior of the two different substrates, we hypothesize that the binding of a single capsid polypeptide does not induce significant conformational changes in the GroEL trans ring, and hence the unoccupied GroEL ring remains accessible for a second capsid molecule.