Metal ion coordination to azole nucleosides

To evaluate the possibility of introducing azole nucleosides as building blocks for metal-mediated base pairs in artificial oligonucleotides, imidazole nucleoside, 1,2,4-triazole nucleoside and tetrazole nucleoside have been synthesized and characterized. The X-ray crystal structures of p-toluoyl-protected 1,2,4-triazole and tetrazole nucleosides are reported. Contrary to the situation primarily found for deoxyribonucleosides, the sugar moieties adopt C3'-endo conformations. The acidity of the beta nucleosides increases with increasing number of nitrogen ring atoms, giving pKa values of 6.01 +/- 0.05, 1.32+/-0.05 and <-3, respectively. This decrease in basicity results in a decreasing ability to form 2:1 complexes with linearly coordinating metal ions such as Ag+ and Hg2+. In all cases, the Ag+ complexes are of higher stability than the corresponding Hg2+ complexes. Whereas imidazole nucleoside forms highly stable 2:1 complexes with both metal ions (estimated log beta2 values of >10), only Ag+ is able to reach this coordination pattern in the case of triazole nucleoside (log beta2 = 4.3 +/- 0.1). Tetrazole nucleoside does not form 2:1 complexes at all under the experimental conditions used. These data suggest that imidazole nucleoside, and to a lesser extent 1,2,4-triazole nucleoside, are likely candidates for successful incorporation as ligands in oligonucleotides based on metal-mediated base pairs. DFT calculations further corroborate this idea, providing model complexes for such base pairs with glycosidic bond distances (10.8-11.0 Angstroms) resembling those in idealized B-DNA (10.85 Angstroms).     

Tandem mass spectrometry methods for definitive protein identification in proteomics research

Optimized procedures have been developed for the addition of sulfonic acid groups to the N-termini of low-level peptides. These procedures have been applied to peptides produced by tryptic digestion of proteins that have been separated by two-dimensional (2-D) gel electrophoresis. The derivatized peptides were sequenced using matrix-assisted laser desorption/ionization (MALDI) post-source decay (PSD) and electrospray ionization-tandem mass spectrometry methods. Reliable PSD sequencing results have been obtained starting with sub-picomole quantities of protein. We estimate that the current PSD sequencing limit is about 300 fmol of protein in the gel. The PSD mass spectra of the derivatized peptides usually allow much more specific protein sequence database searches than those obtained without derivatization. We also report initial automated electrospray ionization-tandem mass spectrometry sequencing of these novel peptide derivatives. Both types of tandem mass spectra provide predictable fragmentation patterns for arginine-terminated peptides. The spectra are easily interpreted de novo, and they facilitate error-tolerant identification of proteins whose sequences have been entered into databases.     

Enantiopure isoplagiochin C by directed deracemization through axis-to-axis chirality transfer

Isoplagiochin C 1 was prepared for the first time in enantiopure form from synthetic racemic material, using a novel stereochemical concept. This macrocyclic bisbibenzyl contains two biaryl axes. Of these, axis A is configurationally stable by its fixation within the macrocyclic framework, while axis B is stereochemically unstable. By diesterification of rac-1 with enantiopure (P)-1,1′-binaphthyl-2,2′-dicarboxylic acid, axis B is locked in its P-configuration, thus allowing the resolution and separate saponification of dilactones (P_A,P_B,P)-3 and (M_A,P_B,P)-3 to give the pure enantiomers of 1. This concept permits recycling of any undesired enantiomer of 1 by thermal equilibration of the respective diastereomer of 3.     

Panchromatic light funneling through the synergy in hexabenzocoronene–(metallo)porphyrin–fullerene assemblies to realize the separation of charges

Here, we present a novel butadiyne-linked HBC-ethynyl-porphyrin dimer, which exhibits in the ground state strong absorption cross sections throughout the UV and visible ranges of the solar spectrum. In short, a unidirectional flow of excited state energy from the HBC termini to the (metallo)porphyrin focal points enables concentrating light at the latter. Control over excitonic interactions within, for example, the electron-donating porphyrin dimers was realized by complexation of bidentate ligands to set up panchromatic absorption that extends all the way into the near-infrared range. The bidentate binding motif was then exploited to create a supramolecular electron donor–acceptor assembly based on a HBC-ethynyl-porphyrin dimer and an electron accepting bis(aminoalkyl)-substituted fullerene. Of great relevance is the fact that charge separation from the photoexcited HBC-ethynyl-porphyrin dimer to the bis(aminoalkyl)-substituted fullerene is activated not only upon photoexciting the HBCs in the UV as well as the (metallo)porphyrins in the visible but also in the NIR. Implicit is the synergetic interplay of energy and charge transfer in a photosynthetic mimicking manner. The dimer and bis-HBC-ethynyl-porphyrin monomers, which serve as references, were probed by means of steady-state as well as time-resolved optical spectroscopies, including global target analyses of the time-resolved transient absorption data.

Here, we present a novel butadiyne-linked HBC-ethynyl-porphyrin dimer, which exhibits in the ground state strong absorption cross sections throughout the UV and visible ranges of the solar spectrum.     

Using Kinetic Modeling and Experimental Data to Evaluate Mechanisms in PET-RAFT

Reversible deactivation radical polymerization (RDRP) techniques have become important tools for polymer chemists because they control the structure and are tolerant to functionality. Photoinduced polymerizations have seen a growing interest due to their mild conditions, as well as spatial and temporal control over the polymerization. Among these techniques, photoinduced electron/energy transfer reversible addition–fragmentation chain transfer polymerization (PET-RAFT) is one of the most widely investigated. While PET-RAFT is seen as an increasingly useful tool, there is still much to understand about the mechanism of this process. In particular, there are ongoing questions regarding the kinetic contribution of electron versus energy transfer. In order to better understand the mechanism, this work aims to use kinetic modeling along with experimental data to help determine the likelihood of the proposed mechanisms for the PET-RAFT process using the trithiocarbonate-mediated polymerization of methyl acrylate with fac-tris[2-phenylpyridinato-C²,N]iridium(III) as a photocatalyst. Simulation data show that electron transfer without a corresponding reduction pathway cannot explain the experimental kinetics, while energy transfer offers a good fit to experimental data. © 2019 Wiley Periodicals, Inc. J. Polym. Sci. 2020 , 58, 139–144     

Temperature and pressure dependent rate coefficients for the reaction of Hg with Br and the reaction of Br with Br: a pulsed laser photolysis-pulsed laser induced fluorescence study

A pulsed laser photolysis-pulsed laser induced fluorescence technique has been employed to study the recombination of mercury and bromine atoms, Hg + Br + M --> HgBr + M (1) and the self-reaction of bromine atoms, Br + Br + M --> Br2 + M (2). Rate coefficients were determined as a function of pressure (200-600 Torr) and temperature (243-293 K) in nitrogen buffer gas and as a function of pressure (200-600 Torr) in helium buffer gas at room temperature. For reaction 1, kinetic measurements were performed under conditions in which bromine atoms were the reactant in excess concentration while simultaneously monitoring the concentration of both mercury and bromine. A temperature dependent expression of (1.46 +/- 0.34) x 10(-32) x (T/298)(-(1.86+/-1.49)) cm6 molecule(-2) s(-1) was determined for the third-order recombination rate coefficient in nitrogen buffer gas. The effective second-order rate coefficient for reaction 1 under atmospheric conditions is a factor of 9 smaller than previously determined in a recently published relative rate study. For reaction 2 we obtain a temperature dependent expression of (4.31 +/- 0.21) x 10(-33) x (T/298)(-(2.77+/-0.30)) cm6 molecule(-2) s(-1) for the third-order recombination rate coefficient in nitrogen buffer gas. The rate coefficients are reported with a 2sigma error of precision only; however, due to the uncertainty in the determination of absolute bromine atom concentrations and other unidentified systematic errors we conservatively estimate an uncertainty of +/-50% in the rate coefficients. For both reactions the observed pressure, temperature and buffer gas dependencies are consistent with the expected behavior for three-body recombination.     

Electron spin resonance study of radicals generated in cellulose/N-methylmorpholine solutions after flash photolysis at 77 K

The processes of radical formation in N-methylmorpholine-N-oxide monohydrate (NMMO) and cellulose/NMMO solutions were studied by ESR at 77 K under high-power UV (lambda = 248 nm) excimer laser flash photolysis. Radicals mainly generated were attributed to the nitroxide type radicals -CH2-NO*-CH2- and -CH2-NO*-CH3 at the first step and methyl *CH3 and formyl *CHO radicals at the second step of the photoreaction. Kinetic studies of these radicals revealed that formation and recombination rates of the radicals depend on the cellulose concentration in cellulose/NMMO solutions and the concentration of additional ingredients, e.g. Fe(II) and propyl gallate. Even at frozen state temperature, acceleration or quenching of radical reaction processes was found. The proposed scheme of UV light-induced NMMO degradation during irradiation based on ESR data correlates well with independently obtained results based on high-performance liquid chromatography (HPLC). The analysis of degradation products by HPLC, e.g. aminoethanol and acetaldehyde, supports the assumption concerning a radical-initiated ring opening of NMMO.     

An Air-Stable Heterobimetallic Si2M2 Tetrahedral Cluster

Air- and moisture-stable heterobimetallic tetrahedral clusters [Cp(CO)₂MSiR]₂ (M=Mo or W; R=SitBu₃) were isolated from the reaction of N-heterocyclic carbene (NHC) stabilized silyl(silylidene) metal complexes Cp(CO)₂M=Si(SitBu₃)NHC with a mild Lewis acid (BPh₃). Alternatively, treatment of the NHC-stabilized silylidene complex Cp(CO)₂W=Si(SitBu₃)NHC with stronger Lewis acids such as AlCl₃ or B(C₆F₅)₃ resulted in the reversible coordination of the Lewis acid to one of the carbonyl ligands. Computational investigations revealed that the dimerization of the intermediate metal silylidyne (M≡Si) complex to a tetrahedral cluster instead of a planar four-membered ring is due to steric bulk.