Furanosyl Oxocarbenium Ion Conformational Energy Landscape Maps as a Tool to Study the Glycosylation Stereoselectivity of 2-Azidofuranoses, 2-Fluorofuranoses and Methyl Furanosyl Uronates

The 3D shape of glycosyl oxocarbenium ions determines their stability and reactivity and the stereochemical course of S_N1 reactions taking place on these reactive intermediates is dictated by the conformation of these species. The nature and configuration of functional groups on the carbohydrate ring affect the stability of glycosyl oxocarbenium ions and control the overall shape of the cations. We herein map the stereoelectronic substituent effects of the C2-azide, C2-fluoride and C4-carboxylic acid ester on the stability and reactivity of the complete suite of diastereoisomeric furanoses by using a combined computational and experimental approach. Surprisingly, all furanosyl donors studied react in a highly stereoselective manner to provide the 1,2-cis products, except for the reactions in the xylose series. The 1,2-cis selectivity for the ribo-, arabino- and lyxo-configured furanosides can be traced back to the lowest-energy ³E or E₃ conformers of the intermediate oxocarbenium ions. The lack of selectivity for the xylosyl donors is related to the occurrence of oxocarbenium ions adopting other conformations.     

Consistency of surface mechanical properties of spread protein layers at the liquid–air interface at different spreading conditions

Π/A isotherms of spread β-lactoglobulin and β-casein at the air–water interface are measured under different spreading conditions. While the isotherms do not show drastic effects of the spreading concentration and the compression rate the interfacial shear rheological behaviour is significantly influenced. In particular, the shear viscosity of β-lactoglobulin layers depend directly on the spreading concentration. Significant viscosity increase is obtained at larger surface pressures when the spreading concentration is increased. In contrast the shear rheology of the spread β-casein layers can be normalised by plotting the viscosities as a function of the surface pressure Π. The different behaviour is discussed in terms of denaturation of the β-lactoglobulin during the monolayer formation process by adsorption from the spread thin protein solution layer.     

Synthesis of 2,3,9,10,16,17,23,24-Octaalkynylphthalocyanines and the Effects of Concentration and Temperature on Their (1)H NMR Spectra

The syntheses of 3,4- and 4,5-diiodophthalonitriles are described. Coupling of the latter compound with Pd(PPh(3))(2)Cl(2) and 1-octyne, 1-heptyne, 1-hexyne, 1-pentyne, and 3,3-dimethyl-1-butyne gave a series of 4,5-dialkynylphthalonitriles. Hydrogenation of 4,5-bis(1-pentynyl)phthalonitrile and 4,5-bis(3,3-dimethyl-1-butynyl)phthalonitrile gave 4,5-dipentylphthalonitrile and 4,5-bis(3,3-dimethylbutyl)phthalonitriles. Condensation of the dialkynylphthalonitriles with lithium 1-pentoxide in 1-pentanol gave 2,3,9,10,16,17,23,24-octaalkynylphthalocyanines, while intervention of the intermediate dilithium phthalocyanines with zinc acetate gave the related zinc(II) phthalocyanines. (1)H NMR spectroscopy of these octaalkynylphthalocyanines exhibited large chemical shifts (1-2 ppm) of the internal and aromatic protons at concentrations ranging from 10(-)(2) to 10(-)(5) M and at temperatures from 27 to 147 degrees C. The effects of aggregation phenomena are discussed. The importance of reporting concentration and temperature values for NMR spectra of phthalocyanines is stressed.     

Dianionic Titanyl and Vanadyl (Cation+)2[MIVO(Pc4−)]2− Phthalocyanine Salts Containing Pc4− Macrocycles

In this study, the titanyl and vanadyl phthalocyanine (Pc) salts (Bu₄N⁺)₂[M^IVO(Pc^4?)]^2? (M=Ti, V) and (Bu₃MeP⁺)₂[M^IVO(Pc^4?)]^2? (M=Ti, V) with [M^IVO(Pc^4?)]^2? dianions were synthesized and characterized. Reduction of M^IVO(Pc^2?) carried out with an excess of sodium fluorenone ketyl in the presence of Bu₄N⁺ or Bu₃MeP⁺ is exclusive to the phthalocyanine centers, forming Pc^4? species. During reduction, the metal +4 charge did not change, implying that Pc is an non‐innocent ligand. The Pc negative charge increase caused the C?N(pyr) bonds to elongate and the C?N(imine) bonds to alternate, thus increasing the distortion of Pc. Jahn–Teller effects are significant in the [eg(π*)]² dianion ground state and can additionally distort the Pc macrocycles. Blueshifts of the Soret and Q‐bands were observed in the UV/Vis/NIR when M^IVO(Pc^2?) was reduced to [M^IVO(Pc ^{. 3?})] ^{. ?} and [M^IVO(Pc^4?)]^2?. From magnetic measurements, [Ti^IVO(Pc^4?)]^2? was found to be diamagnetic and (Bu₄N⁺)₂[V^IVO(Pc^4?)]^2? and (Bu₃MeP⁺)₂[V^IVO(Pc^4?)]^2? were found to have magnetic moments of 1.72–1.78 μ_B corresponding to an S=1/2 spin state owing to V^IV electron spin. As a result, two latter salts show EPR signals with V^IV hyperfine coupling.     

A General Approach Towards Triazole‐Linked Adenosine Diphosphate Ribosylated Peptides and Proteins

Current methods to prepare adenosine diphosphate ribosylated (ADPr) peptides are not generally applicable due to the labile nature of this post‐translational modification and its incompatibility with strong acidic conditions used in standard solid‐phase peptide synthesis. A general strategy is presented to prepare ADPr peptide analogues based on a copper‐catalyzed click reaction between an azide‐modified peptide and an alkyne‐modified ADPr counterpart. The scope of this approach was expanded to proteins by preparing two ubiquitin ADPr analogues carrying the biological relevant α‐glycosidic linkage. Biochemical validation using Legionella effector enzyme SdeA shows that clicked ubiquitin ADPr is well‐tolerated and highlights the potential of this strategy to prepare ADPr proteins.     

Protein–ligand docking using FFT based sampling: D3R case study

Fast Fourier transform (FFT) based approaches have been successful in application to modeling of relatively rigid protein–protein complexes. Recently, we have been able to adapt the FFT methodology to treatment of flexible protein–peptide interactions. Here, we report our latest attempt to expand the capabilities of the FFT approach to treatment of flexible protein–ligand interactions in application to the D3R PL-2016-1 challenge. Based on the D3R assessment, our FFT approach in conjunction with Monte Carlo minimization off-grid refinement was among the top performing methods in the challenge. The potential advantage of our method is its ability to globally sample the protein–ligand interaction landscape, which will be explored in further applications.     

On divisible weighted Dynkin diagrams and reachable elements

Let e be a nilpotent element of a complex simple Lie algebra $ \mathfrak{g} Let e be a nilpotent element of a complex simple Lie algebra \mathfrakg \mathfrak{g} . The weighted Dynkin diagram of e, D(e) \mathcal{D}(e) , is said to be divisible if D(e)

The work of Vladimir Morozov on Lie algebras

We survey the works of V. V. Morozov on Lie algebras concentrating on the following three results on subalgebras of a semisimple complex Lie algebra: the theorem on a nilpotent element, the triangulizability theorem for solvable subalgebras, and the regularity theorem for nonsemisimple maximal subalgebras.     

An Ikehara-type theorem for functions convergent to zero

We establish an analogue of the Ikehara theorem for positive non-increasing functions convergent to zero. In particular, this provides a complete proof of the results formulated in Diekmann & Kaper (1978) [5] and Carr & Chmaj (2004) [1], which are widely used nowadays to prove the uniqueness of traveling waves for various reaction–diffusion equations.     

Quasi‐convexly dense and suitable sets in the arc component of a compact group

Let G be an abelian topological group. The symbol $\widehat{G}Let G be an abelian topological group. The symbol $\widehat{G}$ denotes the group of all continuous characters $\chi :G\rightarrow {\mathbb T}$ endowed with the compact open topology. A subset E of G is said to be qc‐dense in G provided that χ(E)?φ([? 1/4, 1/4]) holds only for the trivial character $\chi \in \widehat{G}$, where $\varphi : {\mathbb R}\rightarrow {\mathbb T}={\mathbb R}/{\mathbb Z}$ is the canonical homomorphism. A super‐sequence is a non‐empty compact Hausdorff space S with at most one non‐isolated point (to which S converges). We prove that an infinite compact abelian group G is connected if and only if its arc component G_a contains a super‐sequence converging to 0 that is qc‐dense in G. This gives as a corollary a recent theorem of Außenhofer: For a connected locally compact abelian group G, the restriction homomorphism $r:\widehat{G}\rightarrow \widehat{G}_a$ defined by $r(\chi )=\chi \upharpoonright _{G_a}$ for $\chi \in \widehat{G}$, is a topological isomorphism. We show that an infinite compact group G is connected if and only if its arc component G_a contains a super‐sequence converging to the identity that is qc‐dense in G and generates a dense subgroup of G. We also offer a short alternative proof of the result of Hofmann and Morris on the existence of suitable sets of minimal size in the arc component of a compact connected group.